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Cbln1os cerebellin 1 precursor protein opposite strand [ Mus musculus (house mouse) ]

Gene ID: 100040294, updated on 5-Apr-2024

Summary

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Official Symbol
Cbln1osprovided by MGI
Official Full Name
cerebellin 1 precursor protein opposite strandprovided by MGI
Primary source
MGI:MGI:3780864
See related
Ensembl:ENSMUSG00000097248 AllianceGenome:MGI:3780864
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm2694; Synage; linc1582; lncRNA-PM; C230036H16Rik
Summary
Is expressed in central nervous system and vibrissa. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in cerebellum adult (RPKM 36.7), testis adult (RPKM 8.2) and 4 other tissues See more
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Genomic context

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Location:
8 C3; 8 42.16 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (88199440..88252182)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (87472812..87525554)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_22201 Neighboring gene predicted gene, 19872 Neighboring gene cerebellin 1 precursor protein Neighboring gene STARR-seq mESC enhancer starr_22203 Neighboring gene STARR-seq mESC enhancer starr_22205 Neighboring gene RIKEN cDNA 4933402J07 gene Neighboring gene STARR-seq mESC enhancer starr_22207 Neighboring gene STARR-seq mESC enhancer starr_22208 Neighboring gene RIKEN cDNA 1700096P03 gene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Long noncoding RNA Gm2694 drives depressive-like behaviors in male mice by interacting with GRP78 to disrupt endoplasmic reticulum homeostasis. Chen HS, et al. Sci Adv, 2022 Dec 2. PMID 36459549, Free PMC Article
  2. Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs. Guttman M, et al. Nat Biotechnol, 2010 May. PMID 20436462, Free PMC Article
  3. lincRNAs act in the circuitry controlling pluripotency and differentiation. Guttman M, et al. Nature, 2011 Aug 28. PMID 21874018, Free PMC Article
  4. The long noncoding RNA Synage regulates synapse stability and neuronal function in the cerebellum. Wang F, et al. Cell Death Differ, 2021 Sep. PMID 33762741, Free PMC Article
  5. Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation. Alvarez-Dominguez JR, et al. Blood, 2014 Jan 23. PMID 24200680, Free PMC Article

See all (16) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Long noncoding RNA Gm2694 drives depressive-like behaviors in male mice by interacting with GRP78 to disrupt endoplasmic reticulum homeostasis.
    Title: Long noncoding RNA Gm2694 drives depressive-like behaviors in male mice by interacting with GRP78 to disrupt endoplasmic reticulum homeostasis.
Submit: New GeneRIF Correction

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

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Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033430.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AK137304
    Related
    ENSMUST00000181159.9

  2. NR_125722.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate 5'-terminal exon and an alternate splice site in the 3'-terminal exon, compared to variant 1.
    Source sequence(s)
    BU962796, BY258569, CD776551
    Related
    ENSMUST00000182758.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    88199440..88252182
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases