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Mindy4b-ps MINDY lysine 48 deubiquitinase 4B, pseudogene [ Mus musculus (house mouse) ]

Gene ID: 100040293, updated on 8-Mar-2024

Summary

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Official Symbol
Mindy4b-psprovided by MGI
Official Full Name
MINDY lysine 48 deubiquitinase 4B, pseudogeneprovided by MGI
Primary source
MGI:MGI:2140018
See related
Ensembl:ENSMUSG00000101860 AllianceGenome:MGI:2140018
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
MINDY4B; Fam188b2; Fam188b2-ps; 5330432B20Rik
Summary
Predicted to enable Lys48-specific deubiquitinase activity. [provided by Alliance of Genome Resources, Apr 2022]
Annotation information
Annotation category: partial on reference assembly
Expression
Low expression observed in reference dataset See more
Orthologs
human all
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Genomic context

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See Mindy4b-ps in Genome Data Viewer
Location:
3 D; 3 28.75 cM
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (58697538..58727655, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (58790117..58822225, complement)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930593A02 gene Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:58494608-58494717 Neighboring gene siah E3 ubiquitin protein ligase 2 Neighboring gene STARR-positive B cell enhancer ABC_E7914 Neighboring gene STARR-positive B cell enhancer mm9_chr3:58559849-58560149 Neighboring gene CDGSH iron-sulfur domain-containing protein 2 pseudogene Neighboring gene predicted gene, 40059 Neighboring gene STARR-seq mESC enhancer starr_07757 Neighboring gene clarin 1 Neighboring gene STARR-seq mESC enhancer starr_07758

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables K48-linked deubiquitinase activity IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
inactive ubiquitin carboxyl-terminal hydrolase MINDY-4B
Names
family with sequence similarity 188, member B2, pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    58697538..58727655 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_055019671.1 → XP_054875646.1  inactive ubiquitin carboxyl-terminal hydrolase MINDY-4B

    Related
    ENSMUSP00000151654.3, ENSMUST00000191233.4
Nucleotide Protein Strain
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