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Gm15411 predicted gene 15411 [ Mus musculus (house mouse) ]

Gene ID: 100039964, updated on 8-Feb-2024

Summary

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Official Symbol
Gm15411provided by MGI
Official Full Name
predicted gene 15411provided by MGI
Primary source
MGI:MGI:3705213
See related
AllianceGenome:MGI:3705213
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in thymus adult (RPKM 4.5), kidney adult (RPKM 1.0) and 8 other tissues See more
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Genomic context

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Location:
5 G3; 5 89.15 cM
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (148890551..148952956, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (148953741..149015880, complement)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene katanin p60 subunit A-like 1 Neighboring gene STARR-positive B cell enhancer ABC_E4807 Neighboring gene predicted gene, 36446 Neighboring gene RIKEN cDNA 8430423G03 gene Neighboring gene STARR-seq mESC enhancer starr_14922 Neighboring gene STARR-seq mESC enhancer starr_14923 Neighboring gene predicted gene, 50627 Neighboring gene predicted gene, 52833 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:149788495-149788715 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:149789353-149789462 Neighboring gene RIKEN cDNA 5930430L01 gene Neighboring gene STARR-positive B cell enhancer ABC_E6409 Neighboring gene STARR-positive B cell enhancer mm9_chr5:149827485-149827786 Neighboring gene predicted gene 15408 Neighboring gene STARR-seq mESC enhancer starr_14924 Neighboring gene STARR-seq mESC enhancer starr_14925 Neighboring gene STARR-positive B cell enhancer ABC_E183 Neighboring gene high mobility group box 1 Neighboring gene predicted gene, 30078

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Clone Names

  • AC158782.4, AC158782.7

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    148890551..148952956 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_868721.3 RNA Sequence

  2. XR_003956016.2 RNA Sequence

  3. XR_377237.3 RNA Sequence

  4. XR_868717.2 RNA Sequence

  5. XR_004942685.1 RNA Sequence

  6. XR_377241.4 RNA Sequence

  7. XR_003956010.1 RNA Sequence

  8. XR_004942686.1 RNA Sequence

  9. XR_377254.2 RNA Sequence

  10. XR_377255.2 RNA Sequence

  11. XR_003956013.2 RNA Sequence

  12. XR_003956012.2 RNA Sequence

  13. XR_004942684.1 RNA Sequence

  14. XR_004942683.1 RNA Sequence

  15. XR_004942687.1 RNA Sequence

  16. XR_003956014.2 RNA Sequence

  17. XR_003956017.2 RNA Sequence

  18. XR_377243.3 RNA Sequence

  19. XR_377244.3 RNA Sequence

  20. XR_868719.3 RNA Sequence

  21. XR_868720.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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