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2810407A14Rik RIKEN cDNA 2810407A14 gene [ Mus musculus (house mouse) ]

Gene ID: 100039901, updated on 8-Feb-2024

Summary

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Official Symbol
2810407A14Rikprovided by MGI
Official Full Name
RIKEN cDNA 2810407A14 geneprovided by MGI
Primary source
MGI:MGI:1917461
See related
AllianceGenome:MGI:1917461
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
16 C3.3; 16 50.01 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (87619725..87669082)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (87823950..87872183)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:87709451-87709604 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:87723887-87724040 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:87727532-87727781 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:87729167-87729320 Neighboring gene BTB and CNC homology 1, basic leucine zipper transcription factor 1 Neighboring gene predicted gene, 32925 Neighboring gene predicted gene, 23994 Neighboring gene RIKEN cDNA 4930590A17 gene Neighboring gene glutamate receptor, ionotropic, kainate 1 Neighboring gene predicted gene, 51405 Neighboring gene predicted gene, 33207

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome. Mural RJ, et al. Science, 2002 May 31. PMID 12040188
  2. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    87619725..87669082
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_385021.5 RNA Sequence

  2. XR_876214.2 RNA Sequence

  3. XR_876213.3 RNA Sequence

  4. XR_876212.3 RNA Sequence

  5. XR_876211.3 RNA Sequence

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_175156.2: Suppressed sequence

    Description
    NM_175156.2: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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