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Gm2427 predicted gene 2427 [ Mus musculus (house mouse) ]

Gene ID: 100039794, updated on 8-Feb-2024

Summary

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Official Symbol
Gm2427provided by MGI
Official Full Name
predicted gene 2427provided by MGI
Primary source
MGI:MGI:3780593
See related
AllianceGenome:MGI:3780593
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Ubiquitous expression in lung adult (RPKM 3.1), heart adult (RPKM 2.0) and 27 other tissues See more
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Genomic context

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See Gm2427 in Genome Data Viewer
Location:
1 C5; 1 43.59 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (85425706..85441068)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (85496430..85514604)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene component of Sp100-rs-like Neighboring gene predicted gene 7592 Neighboring gene predicted gene 7281 Neighboring gene STARR-seq mESC enhancer starr_01546 Neighboring gene STARR-seq mESC enhancer starr_01547 Neighboring gene predicted gene 2666 Neighboring gene STARR-seq mESC enhancer starr_01548 Neighboring gene STARR-positive B cell enhancer mm9_chr1:87441371-87441672 Neighboring gene STARR-seq mESC enhancer starr_01549 Neighboring gene Sp110 nuclear body protein Neighboring gene Sp140 nuclear body protein Neighboring gene STARR-seq mESC enhancer starr_01550 Neighboring gene STARR-seq mESC enhancer starr_01551 Neighboring gene nuclear antigen Sp100 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:87584047-87584232 Neighboring gene STARR-positive B cell enhancer ABC_E1221 Neighboring gene STARR-positive B cell enhancer ABC_E323

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
nuclear body protein SP140-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    85425706..85441068
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036155330.1 → XP_036011223.1  nuclear body protein SP140-like protein

    Conserved Domains (3) summary
    cd15626
    Location:155 → 196
    PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
    pfam01342
    Location:62 → 137
    SAND; SAND domain
    cl02556
    Location:219 → 297
    Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Nucleotide Protein Strain
Heading Accession and Version

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