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Atp6v0c-ps2 ATPase, H+ transporting, lysosomal V0 subunit C, pseudogene 2 [ Mus musculus (house mouse) ]

Gene ID: 100039636, updated on 8-Feb-2024

Summary

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Official Symbol
Atp6v0c-ps2provided by MGI
Official Full Name
ATPase, H+ transporting, lysosomal V0 subunit C, pseudogene 2provided by MGI
Primary source
MGI:MGI:2151816
See related
AllianceGenome:MGI:2151816
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Atp6c3; Gm15487; Atpl-rs2; Atp6c-rs2; Atp6l-ps2; Atp6v0c-rs2; MGPLlambda1-3
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Genomic context

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Location:
6 B1; 6 16.91 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (37782910..37784042)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (37805975..37807107)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_15594 Neighboring gene Y box protein 1, pseudogene 2 Neighboring gene predicted gene, 38791 Neighboring gene STARR-seq mESC enhancer starr_15595 Neighboring gene STARR-seq mESC enhancer starr_15596 Neighboring gene STARR-seq mESC enhancer starr_15597 Neighboring gene STARR-seq mESC enhancer starr_15598 Neighboring gene STARR-seq mESC enhancer starr_15600 Neighboring gene STARR-seq mESC enhancer starr_15601 Neighboring gene STARR-seq mESC enhancer starr_15602 Neighboring gene STARR-seq mESC enhancer starr_15603 Neighboring gene STARR-seq mESC enhancer starr_15604 Neighboring gene STARR-seq mESC enhancer starr_15605 Neighboring gene STARR-seq mESC enhancer starr_15606 Neighboring gene STARR-seq mESC enhancer starr_15608 Neighboring gene STARR-seq mESC enhancer starr_15609 Neighboring gene STARR-positive B cell enhancer mm9_chr6:37820554-37820855 Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:37821510-37821693 Neighboring gene STARR-seq mESC enhancer starr_15610 Neighboring gene general transcription factor IIB pseudogene Neighboring gene tripartite motif-containing 24 Neighboring gene STARR-positive B cell enhancer mm9_chr6:37846121-37846422 Neighboring gene STARR-seq mESC enhancer starr_15611

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The murine genome contains one functional gene and two pseudogenes coding for the 16 kDa proteolipid subunit of vacuolar H(+)-ATPase. Hayami K, et al. Gene, 2001 Aug 8. PMID 11595166
  2. Chromosomal localization of three vacuolar-H+ -ATPase 16 kDa subunit (ATP6V0C) genes in the murine genome. Simckes AM, et al. Cytogenet Genome Res, 2002. PMID 12438748
  3. Neuronal ceroid lipofuscinosis (nclf), a new disorder of the mouse linked to chromosome 9. Bronson RT, et al. Am J Med Genet, 1998 May 26. PMID 9600738
  4. A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome. Mural RJ, et al. Science, 2002 May 31. PMID 12040188
  5. Genetic mapping of 262 loci derived from expressed sequences in a murine interspecific cross using single-strand conformational polymorphism analysis. Brady KP, et al. Genome Res, 1997 Nov. PMID 9371744, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Other Names

  • ATPase, H+ transporting, V0 subunit C, related sequence 2
  • ATPase, H+ transporting, lysosomal (vacuolar proton pump), pseudogene 2
  • ATPase, H+ transporting, lysosomal 16kD, V0 subunit C, related sequence 2
  • ATPase, H+ transporting, lysosomal 16kD, V0 subunit c, pseudogene 2
  • ATPase, H+ transporting, lysosomal 3
  • lysosomal 16kDa
  • vacuolar H(+)-ATPase pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_037854.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC153623

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    37782910..37784042
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_007361.1: Suppressed sequence

    Description
    NG_007361.1: This RefSeq was permanently suppressed because it is now thought that this gene is a transcribed pseudogene.
Nucleotide Protein Strain
Heading Accession and Version

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