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Sft2d1rt SFT2 domain containing 1, retrotransposed [ Mus musculus (house mouse) ]

Gene ID: 100039624, updated on 8-Feb-2024

Summary

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Official Symbol
Sft2d1rtprovided by MGI
Official Full Name
SFT2 domain containing 1, retrotransposedprovided by MGI
Primary source
MGI:MGI:3650635
See related
Ensembl:ENSMUSG00000069899 AllianceGenome:MGI:3650635
Gene type
pseudo
RefSeq status
INFERRED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm12166
Summary
Orthologous to human SFT2D1 (SFT2 domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:
11 B1.1; 11 27.53 cM
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (45942192..45943175, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (46051365..46052348, complement)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene SRY (sex determining region Y)-box 30 Neighboring gene STARR-seq mESC enhancer starr_29309 Neighboring gene STARR-seq mESC enhancer starr_29310 Neighboring gene predicted gene 12165 Neighboring gene STARR-positive B cell enhancer ABC_E10671 Neighboring gene ADAM metallopeptidase domain 19 Neighboring gene STARR-seq mESC enhancer starr_29320 Neighboring gene STARR-seq mESC enhancer starr_29321 Neighboring gene microRNA 8100 Neighboring gene STARR-positive B cell enhancer ABC_E3942 Neighboring gene STARR-positive B cell enhancer ABC_E8393 Neighboring gene STARR-positive B cell enhancer ABC_E5219 Neighboring gene NIPA-like domain containing 4 Neighboring gene predicted gene, 35624

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Other Names

  • SFT2 domain containing 1 pseudogene

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_029646.1 

    Range
    101..1084
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    45942192..45943175 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001081681.1: Suppressed sequence

    Description
    NM_001081681.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.

  2. NR_015372.2: Suppressed sequence

    Description
    NR_015372.2: This RefSeq was permanently suppressed because there is insufficient evidence that this locus is transcribed.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials