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Gm2042 predicted gene 2042 [ Mus musculus (house mouse) ]

Gene ID: 100039087, updated on 8-Feb-2024

Summary

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Official Symbol
Gm2042provided by MGI
Official Full Name
predicted gene 2042provided by MGI
Primary source
MGI:MGI:3800544
See related
Ensembl:ENSMUSG00000096276 AllianceGenome:MGI:3800544
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Restricted expression toward ovary adult (RPKM 1.3) See more
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Genomic context

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Location:
12 D2; 12 42.11 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (87921250..87927452)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (87954480..87960682)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 1A domain containing 14 Neighboring gene GLE1 RNA export mediator pseudogene Neighboring gene eukaryotic translation initiation factor 1A domain containing 5 Neighboring gene predicted gene 2099

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC103249

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
oogenesin 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001270792.1 → NP_001257721.1  oogenesin 1-like isoform 1

    See identical proteins and their annotated locations for NP_001257721.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AK087852, AK135749, CT954323
    Consensus CDS
    CCDS56852.1
    UniProtKB/TrEMBL
    Q5RJV9, Q5XG66
    Related
    ENSMUSP00000105772.4, ENSMUST00000110145.12

  2. NM_001270793.1 → NP_001257722.1  oogenesin 1-like isoform 2

    See identical proteins and their annotated locations for NP_001257722.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site that results in a frameshift in the 3' coding region, compared to variant 1. The encoded isoform (2) has a distinct C-terminus and is shorter than isoform 1.
    Source sequence(s)
    AK087852, CT954323
    Consensus CDS
    CCDS59578.1
    UniProtKB/TrEMBL
    A6PWB4, Q8C2W0
    Related
    ENSMUSP00000137784.2, ENSMUST00000180706.8

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    87921250..87927452
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006515315.3 → XP_006515378.1  oogenesin 1-like isoform X1

    UniProtKB/TrEMBL
    Q5XG66
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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