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Platr8 pluripotency associated transcript 8 [ Mus musculus (house mouse) ]

Gene ID: 100038454, updated on 8-Feb-2024

Summary

Official Symbol
Platr8provided by MGI
Official Full Name
pluripotency associated transcript 8provided by MGI
Primary source
MGI:MGI:3652122
See related
Ensembl:ENSMUSG00000063751 AllianceGenome:MGI:3652122
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm13939
Expression
Low expression observed in reference dataset See more
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Genomic context

Location:
2 E3; 2 56.65 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (109732741..109743664, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (109902396..109913319, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_05359 Neighboring gene predicted gene, 54141 Neighboring gene STARR-positive B cell enhancer ABC_E9200 Neighboring gene STARR-positive B cell enhancer ABC_E813 Neighboring gene STARR-seq mESC enhancer starr_05361 Neighboring gene STARR-positive B cell enhancer ABC_E5957 Neighboring gene lin-7 homolog C, crumbs cell polarity complex component Neighboring gene STARR-seq mESC enhancer starr_05363 Neighboring gene leucine-rich repeat-containing G protein-coupled receptor 4 Neighboring gene STARR-positive B cell enhancer ABC_E5958 Neighboring gene coiled-coil domain containing 34 Neighboring gene coiled-coil domain containing 34, opposite strand

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033473.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL845423
    Related
    ENSMUST00000146110.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    109732741..109743664 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)