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Niban3 niban apoptosis regulator 3 [ Mus musculus (house mouse) ]

Gene ID: 100037278, updated on 8-Mar-2024

Summary

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Official Symbol
Niban3provided by MGI
Official Full Name
niban apoptosis regulator 3provided by MGI
Primary source
MGI:MGI:3686743
See related
Ensembl:ENSMUSG00000043243 AllianceGenome:MGI:3686743
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Bcnp1; Fam129c
Summary
Orthologous to human NIBAN3 (niban apoptosis regulator 3). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in spleen adult (RPKM 24.5), thymus adult (RPKM 3.3) and 3 other tissues See more
Orthologs
human all
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Genomic context

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Location:
8 B3.3; 8 34.43 cM
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (72049000..72061599)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (71596356..71608146)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E10508 Neighboring gene solute carrier family 27 (fatty acid transporter), member 1 Neighboring gene 6-phosphogluconolactonase Neighboring gene STARR-positive B cell enhancer ABC_E9025 Neighboring gene collagen beta(1-O)galactosyltransferase 1 Neighboring gene STARR-positive B cell enhancer ABC_E6654 Neighboring gene unc-13 homolog A Neighboring gene predicted gene, 39195

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Distinct roles of BCNP1 in B-cell development and activation. Hong R, et al. Int Immunol, 2020 Jan 9. PMID 31412363
  2. The B cell novel protein 1 (BCNP1) regulates BCR signaling and B cell apoptosis. Hong R, et al. Eur J Immunol, 2019 Jun. PMID 30888050
  3. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199
  4. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1)  1 citation
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
protein Niban 3
Names
BCNP1 homolog
family with sequence similarity 129, member C

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001166213.2 → NP_001159685.1  protein Niban 3 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 3' coding region, compared to variant 1. This results in a shorter protein (isoform 2), compared to isoform 1.
    Source sequence(s)
    AC162033
    Consensus CDS
    CCDS52587.1
    UniProtKB/TrEMBL
    D3YZB0
    Related
    ENSMUSP00000123432.2, ENSMUST00000143662.8

  2. NM_001384129.1 → NP_001371058.1  protein Niban 3 isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform.
    Source sequence(s)
    AC162033

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    72049000..72061599
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006509530.4 → XP_006509593.1  protein Niban 3 isoform X1

  2. XM_036153693.1 → XP_036009586.1  protein Niban 3 isoform X2

    UniProtKB/TrEMBL
    Q3TQH6

RNA

  1. XR_004934733.1 RNA Sequence

  2. XR_379027.4 RNA Sequence

  3. XR_003947209.2 RNA Sequence

  4. XR_379028.4 RNA Sequence

  5. XR_004934734.1 RNA Sequence

  6. XR_004934735.1 RNA Sequence

  7. XR_004934727.1 RNA Sequence

  8. XR_004934728.1 RNA Sequence

  9. XR_004934730.1 RNA Sequence

  10. XR_004934731.1 RNA Sequence

  11. XR_004934732.1 RNA Sequence

  12. XR_004934729.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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