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Umad1 UMAP1-MVP12 associated (UMA) domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 100036521, updated on 8-Mar-2024

Summary

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Official Symbol
Umad1provided by MGI
Official Full Name
UMAP1-MVP12 associated (UMA) domain containing 1provided by MGI
Primary source
MGI:MGI:3840148
See related
Ensembl:ENSMUSG00000089862 AllianceGenome:MGI:3840148
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm16039
Summary
Is expressed in central nervous system and retina. Orthologous to human UMAD1 (UBAP1-MVB12-associated (UMA) domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in CNS E18 (RPKM 8.0), kidney adult (RPKM 6.9) and 28 other tissues See more
Orthologs
human all
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Genomic context

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See Umad1 in Genome Data Viewer
Location:
6 A1; 6 3.53 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (8259288..8428767)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (8259288..8428767)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_15112 Neighboring gene meiosis regulator for oocyte development Neighboring gene STARR-positive B cell enhancer ABC_E1064 Neighboring gene STARR-positive B cell enhancer mm9_chr6:8225128-8225429 Neighboring gene replication protein A3 Neighboring gene STARR-seq mESC enhancer starr_15115 Neighboring gene STARR-seq mESC enhancer starr_15116 Neighboring gene STARR-seq mESC enhancer starr_15117 Neighboring gene predicted gene, 46952 Neighboring gene lysyl-tRNA synthetase pseudogene Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:8435517-8436018 Neighboring gene RIKEN cDNA A430035B10 gene Neighboring gene STARR-positive B cell enhancer ABC_E126 Neighboring gene predicted gene, 26075

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Expression patterns of SP1 and SP3 during mouse spermatogenesis: SP1 down-regulation correlates with two successive promoter changes and translationally compromised transcripts. Ma W, et al. Biol Reprod, 2008 Aug. PMID 18417714, Free PMC Article
  2. Sox2-Evf2 lncRNA-mediated mechanisms of chromosome topological control in developing forebrain. Cajigas I, et al. Development, 2021 Mar 15. PMID 33593819, Free PMC Article
  3. The Evf2 Ultraconserved Enhancer lncRNA Functionally and Spatially Organizes Megabase Distant Genes in the Developing Forebrain. Cajigas I, et al. Mol Cell, 2018 Sep 20. PMID 30146317, Free PMC Article
  4. A molecular profile of a hematopoietic stem cell niche. Hackney JA, et al. Proc Natl Acad Sci U S A, 2002 Oct 1. PMID 12226475, Free PMC Article
  5. Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method. Piao Y, et al. Genome Res, 2001 Sep. PMID 11544199, Free PMC Article

See all (17) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Potential readthrough

Included gene: Glcci1

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
UBAP1-MVB12-associated (UMA)-domain containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001302353.1 → NP_001289282.1  UBAP1-MVB12-associated (UMA)-domain containing protein 1 isoform 1

    See identical proteins and their annotated locations for NP_001289282.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AK009885, BQ176979, BQ829587, BY291850, CF165156
    Consensus CDS
    CCDS80487.1
    UniProtKB/TrEMBL
    E0CX23
    Related
    ENSMUSP00000124993.2, ENSMUST00000160705.8
    Conserved Domains (1) summary
    pfam07718
    Location:92 → 118
    Coatamer_beta_C; Coatomer beta C-terminal region

  2. NM_001302354.1 → NP_001289283.1  UBAP1-MVB12-associated (UMA)-domain containing protein 1 isoform 2

    See identical proteins and their annotated locations for NP_001289283.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate in-frame exon, compared to variant 1. The encoded isoform (2) is shorter than isoform 1.
    Source sequence(s)
    AK009885, BQ176979, BY291850, CF165156
    Consensus CDS
    CCDS80488.1
    UniProtKB/TrEMBL
    E0CXP6, E0CZ38
    Related
    ENSMUSP00000124564.2, ENSMUST00000159433.8
    Conserved Domains (1) summary
    pfam07718
    Location:66 → 92
    Coatamer_beta_C; Coatomer beta C-terminal region

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    8259288..8428767
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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