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OTX2P1 OTX2 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 100033409, updated on 10-Oct-2023

Summary

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Official Symbol
OTX2P1provided by HGNC
Official Full Name
OTX2 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:33281
See related
AllianceGenome:HGNC:33281
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
OTX2P
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Genomic context

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Location:
9q21.13
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (75724171..75724811, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (87880725..87881366, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (78339087..78339727, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene CDCA7 pseudogene 2 Neighboring gene uncharacterized LOC124902351 Neighboring gene uncharacterized LOC105376091 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19956 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr9:78532862-78534061 Neighboring gene proprotein convertase subtilisin/kexin type 5 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr9:78638373-78639572 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:78662054-78662225 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:78740263-78740490 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:78821667-78822191 Neighboring gene RNA binding motif protein 22 pseudogene 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • orthodenticle homeobox 2 pseudogene 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_032194.1 

    Range
    101..741
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    75724171..75724811 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    87880725..87881366 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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