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POU5F1P6 POU class 5 homeobox 1 pseudogene 6 [ Homo sapiens (human) ]

Gene ID: 100009668, updated on 10-Oct-2023

Summary

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Official Symbol
POU5F1P6provided by HGNC
Official Full Name
POU class 5 homeobox 1 pseudogene 6provided by HGNC
Primary source
HGNC:HGNC:33312
See related
Ensembl:ENSG00000242551 AllianceGenome:HGNC:33312
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
3q21.3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (128674415..128677051, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (131418735..131421689, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (128393258..128395894, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124909430 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:128309380-128309880 Neighboring gene Sharpr-MPRA regulatory region 3129 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:128321651-128322150 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14708 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20484 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:128336746-128337257 Neighboring gene ribophorin I Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:128363771-128364272 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:128364273-128364772 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20487 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14709 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20488 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20489 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:128384140-128385070 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20490 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:128399363-128400055 Neighboring gene small nucleolar RNA SNORA24 Neighboring gene MPRA-validated peak4821 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20493 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:128444909-128445893 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_64587 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20494 Neighboring gene RAB7A, member RAS oncogene family Neighboring gene MARK2 pseudogene 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multiple retropseudogenes from pluripotent cell-specific gene expression indicates a potential signature for novel gene identification. Pain D, et al. J Biol Chem, 2005 Feb 25. PMID 15640145
  2. Oct4 pseudogenes are transcribed in cancers. Suo G, et al. Biochem Biophys Res Commun, 2005 Dec 2. PMID 16229821

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • POU domain class 5, transcription factor 1 pseudogene 6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_006105.4 

    Range
    101..2737
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    128674415..128677051 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    131418735..131421689 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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