RNA5-8SN5 RNA, 5.8S ribosomal N5 [Homo sapiens (human)] - Gene

Summary

Official Symbol: RNA5-8SN5provided by HGNC
Official Full Name: RNA, 5.8S ribosomal N5provided by HGNC
Primary source: HGNC:HGNC:53533
Gene type: rRNA
RefSeq status: VALIDATED
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as: RN5-8S1; RNA5-8S5
Summary: 45S ribosomal DNA (rDNA) arrays, or clusters, are present on human chromosomes 13, 14, 15, 21 and 22, designated RNR1 through RNR5, respectively. Each cluster consists of multiple 45S rDNA repeat units that vary in number among individuals and chromosomes, with total diploid copy number estimates ranging from 60 to >800 repeat units in a human genome. The 45S rDNA repeat unit encodes a 45S rRNA precursor, transcribed by RNA polymerase I, which is processed to form the 18S, 5.8S and 28S rRNAs. This gene is a representative copy of the 5.8S ribosomal RNA whose chromosomal location is unknown. [provided by RefSeq, Mar 2017]
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Genomic context

Location:: chromosome: 22

Exon count:: 1

Annotation release	Status	Assembly	Chr	Location
RS_2023_10	current	GRCh38.p14 (GCF_000001405.40)	Unplaced Scaffold	NT_167214.1 (112024..112180)
RS_2023_10	current	T2T-CHM13v2.0 (GCF_009914755.1)	22	NC_060946.1 (5630294..5630450)
105.20220307	previous assembly	GRCh37.p13 (GCF_000001405.25)	Unplaced Scaffold	NT_167214.1 (112024..112180)

NT_167214.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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Markers

G47279 (e-PCR)
- UniSTS:108062

ITS (e-PCR), detects polymorphism
- UniSTS:275294

PMC128323P1 (e-PCR)
- UniSTS:270576

Other Names

5.8S rRNA 5
5.8S ribosomal RNA
RNA, 5.8S ribosomal 1
RNA, 5.8S ribosomal 5

Gene Ontology Provided by GOA

Function	Evidence Code	Pubs
enables structural constituent of ribosome	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in ribosome	IEA Inferred from Electronic Annotation more info

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.