nsv5871436
- Organism: Homo sapiens
- Study:nstd209 (Almarri et al. 2020)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:33,278
- Publication(s):Almarri et al. 2020
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 659 SVs from 69 studies. See in: genome view
Overlapping variant regions from other studies: 523 SVs from 64 studies. See in: genome view
Overlapping variant regions from other studies: 187 SVs from 20 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5871436 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000017.11 | Chr17 | 399,177 | 432,454 | ||
| nsv5871436 | Remapped | Pass | GRCh37.p13 | Primary Assembly | Second Pass | NC_000017.10 | Chr17 | 252,429 | 282,245 |
| nsv5871436 | Remapped | Pass | GRCh37.p13 | PATCHES | First Pass | NW_003315951.1 | Chr17|NW_0 03315951.1 | 1 | 29,817 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Copy number |
|---|---|---|---|---|
| nssv17473744 | copy number variation | Sequencing | Sequence alignment | 2 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv17473744 | Submitted genomic | GRCh38 (hg38) | NC_000017.11 | Chr17 | 399,177 | 432,454 | ||
| nssv17473744 | Remapped | Pass | GRCh37.p13 | First Pass | NW_003315951.1 | Chr17|NW_0 03315951.1 | 1 | 29,817 |
| nssv17473744 | Remapped | Pass | GRCh37.p13 | Second Pass | NC_000017.10 | Chr17 | 252,429 | 282,245 |