nsv5857978
- Organism: Homo sapiens
- Study:nstd209 (Almarri et al. 2020)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:3
- Validation:Not tested
- Clinical Assertions: No
- Region Size:6,093
- Publication(s):Almarri et al. 2020
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1867 SVs from 81 studies. See in: genome view
Overlapping variant regions from other studies: 1485 SVs from 71 studies. See in: genome view
Overlapping variant regions from other studies: 950 SVs from 44 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5857978 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000010.11 | Chr10 | 47,683,244 | 47,689,336 | ||
| nsv5857978 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | Second Pass | NC_000010.10 | Chr10 | 47,373,264 | 47,379,356 |
| nsv5857978 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_003871068.1 | Chr10|NW_0 03871068.1 | 1,954,359 | 1,960,451 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Copy number |
|---|---|---|---|---|
| nssv17451346 | copy number variation | Sequencing | Sequence alignment | 2 |
| nssv17452301 | copy number variation | Sequencing | Sequence alignment | 0 |
| nssv17463149 | copy number variation | Sequencing | Sequence alignment | 3 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv17451346 | Submitted genomic | GRCh38 (hg38) | NC_000010.11 | Chr10 | 47,683,244 | 47,689,336 | ||
| nssv17452301 | Submitted genomic | GRCh38 (hg38) | NC_000010.11 | Chr10 | 47,683,244 | 47,689,336 | ||
| nssv17463149 | Submitted genomic | GRCh38 (hg38) | NC_000010.11 | Chr10 | 47,683,244 | 47,689,336 | ||
| nssv17451346 | Remapped | Perfect | GRCh37.p13 | First Pass | NW_003871068.1 | Chr10|NW_0 03871068.1 | 1,954,359 | 1,960,451 |
| nssv17452301 | Remapped | Perfect | GRCh37.p13 | First Pass | NW_003871068.1 | Chr10|NW_0 03871068.1 | 1,954,359 | 1,960,451 |
| nssv17463149 | Remapped | Perfect | GRCh37.p13 | First Pass | NW_003871068.1 | Chr10|NW_0 03871068.1 | 1,954,359 | 1,960,451 |
| nssv17451346 | Remapped | Perfect | GRCh37.p13 | Second Pass | NC_000010.10 | Chr10 | 47,373,264 | 47,379,356 |
| nssv17452301 | Remapped | Perfect | GRCh37.p13 | Second Pass | NC_000010.10 | Chr10 | 47,373,264 | 47,379,356 |
| nssv17463149 | Remapped | Perfect | GRCh37.p13 | Second Pass | NC_000010.10 | Chr10 | 47,373,264 | 47,379,356 |