nsv5680974
- Organism: Homo sapiens
- Study:nstd211 (Chuang et al. 2021)
- Variant Type:mobile element insertion
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:2
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Description:Insertion of a Alu mobile element relative to the reference
- Publication(s):Chuang et al. 2021
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 154 SVs from 27 studies. See in: genome view
Overlapping variant regions from other studies: 154 SVs from 27 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5680974 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000004.12 | Chr4 | 158,198,509 | 158,198,509 | ||
| nsv5680974 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000004.11 | Chr4 | 159,119,661 | 159,119,661 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv17175729 | alu insertion | Sequencing | Other |
| nssv17212582 | alu insertion | Sequencing | Other |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv17175729 | Submitted genomic | NC_000004.12:g.158 198509_158198510in s280 | GRCh38 (hg38) | NC_000004.12 | Chr4 | 158,198,509 | 158,198,509 | ||
| nssv17212582 | Submitted genomic | NC_000004.12:g.158 198509_158198510in s280 | GRCh38 (hg38) | NC_000004.12 | Chr4 | 158,198,509 | 158,198,509 | ||
| nssv17175729 | Remapped | Perfect | NC_000004.11:g.159 119661_159119662in s280 | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 159,119,661 | 159,119,661 |
| nssv17212582 | Remapped | Perfect | NC_000004.11:g.159 119661_159119662in s280 | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 159,119,661 | 159,119,661 |