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dbVar

Database of genomic structural variation

nsv5325419

Organism: Homo sapiens

Study:nstd204 (Chen et al. 2021)
Variant Type:translocation
Method Type:Sequencing
Submitted on:GRCh38

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:1

Publication(s):Chen et al. 2021

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 216 SVs from 35 studies. See in: genome view

Submitted genomic166,585,502-166,585,502

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop	strand
nsv5325419	Submitted genomic		GRCh38.p13	Primary Assembly		NC_000006.12	Chr6	166,585,502	166,585,502	+
nsv5325419	Submitted genomic		GRCh38.p13	Primary Assembly		NC_000006.12	Chr6	166,586,678	166,586,678	+
nsv5325419	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000006.11	Chr6	166,998,990	166,998,990	+
nsv5325419	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000006.11	Chr6	167,000,166	167,000,166	+

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv16775426	intrachromosomal translocation	Sequencing	Split read and paired-end mapping

Variant Call Placement Information

Variant Call ID	Placement Type	Score	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop	strand
nssv16775426	Submitted genomic		GRCh38.p13		NC_000006.12	Chr6	166,585,502	166,585,502	+
nssv16775426	Submitted genomic		GRCh38.p13		NC_000006.12	Chr6	166,586,678	166,586,678	+
nssv16775426	Remapped	Perfect	GRCh37.p13	First Pass	NC_000006.11	Chr6	166,998,990	166,998,990	+
nssv16775426	Remapped	Perfect	GRCh37.p13	First Pass	NC_000006.11	Chr6	167,000,166	167,000,166	+

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.

Genotype Information

Variant Call ID	Allele Frequency (AF)
nssv16775426	0.003

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