nsv5322486
- Organism: Homo sapiens
- Study:nstd204 (Chen et al. 2021)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:2,158
- Publication(s):Chen et al. 2021
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 157 SVs from 25 studies. See in: genome view
Overlapping variant regions from other studies: 157 SVs from 25 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5322486 | Submitted genomic | GRCh38.p13 | Primary Assembly | NC_000017.11 | Chr17 | 78,159,569 (-30, +263) | 78,161,726 (-386, +29) | ||
| nsv5322486 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000017.10 | Chr17 | 76,155,650 (-30, +263) | 76,157,807 (-386, +29) |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16759906 | deletion | Sequencing | Split read and paired-end mapping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16759906 | Submitted genomic | NC_000017.11:g.(78 159539_78159832)_( 78161340_78161755) del | GRCh38.p13 | NC_000017.11 | Chr17 | 78,159,569 (-30, +263) | 78,161,726 (-386, +29) | ||
| nssv16759906 | Remapped | Perfect | NC_000017.10:g.(76 155620_76155913)_( 76157421_76157836) del | GRCh37.p13 | First Pass | NC_000017.10 | Chr17 | 76,155,650 (-30, +263) | 76,157,807 (-386, +29) |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) |
|---|---|
| nssv16759906 | <0.001 |