nsv5110974
- Organism: Homo sapiens
- Study:nstd203 (Borges-Monroy et al. 2021)
- Variant Type:mobile element insertion
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:30
- Publication(s):Borges-Monroy et al. 2021
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 449 SVs from 49 studies. See in: genome view
Overlapping variant regions from other studies: 481 SVs from 49 studies. See in: genome view
Overlapping variant regions from other studies: 68 SVs from 20 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5110974 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000008.11 | Chr8 | 144,421,663 | 144,421,692 | ||
| nsv5110974 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | Second Pass | NC_000008.10 | Chr8 | 145,647,047 | 145,647,076 |
| nsv5110974 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_003315924.1 | Chr8|NW_00 3315924.1 | 190,922 | 190,951 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16672754 | alu insertion | Sequencing | Split read and paired-end mapping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16672754 | Submitted genomic | NC_000008.11:g.144 421663_144421692in s201 | GRCh38 (hg38) | NC_000008.11 | Chr8 | 144,421,663 | 144,421,692 | ||
| nssv16672754 | Remapped | Perfect | NW_003315924.1:g.1 90922_190951ins201 | GRCh37.p13 | First Pass | NW_003315924.1 | Chr8|NW_00 3315924.1 | 190,922 | 190,951 |
| nssv16672754 | Remapped | Perfect | NC_000008.10:g.145 647047_145647076in s201 | GRCh37.p13 | Second Pass | NC_000008.10 | Chr8 | 145,647,047 | 145,647,076 |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Genotype Information
| Variant Call ID | Allele Frequency (AF) |
|---|---|
| nssv16672754 | 1 |