nsv4899747
- Organism: Homo sapiens
- Study:nstd200 (Abel et al. 2020)
- Variant Type:mobile element deletion
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:323
- Publication(s):Abel et al. 2020
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 145 SVs from 26 studies. See in: genome view
Overlapping variant regions from other studies: 145 SVs from 26 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
---|---|---|---|---|---|---|---|---|---|
nsv4899747 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000012.12 | Chr12 | 9,059,999 (-27, +27) | 9,060,321 (-42, +42) | ||
nsv4899747 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000012.11 | Chr12 | 9,212,595 (-27, +27) | 9,212,917 (-42, +42) |
Variant Call Information
Variant Call ID | Type | Method | Analysis |
---|---|---|---|
nssv16530100 | alu deletion | Sequencing | Sequence alignment |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
---|---|---|---|---|---|---|---|---|---|
nssv16530100 | Submitted genomic | NC_000012.12:g.(90 59972_9060026)_(90 60279_9060363)del | GRCh38 (hg38) | NC_000012.12 | Chr12 | 9,059,999 (-27, +27) | 9,060,321 (-42, +42) | ||
nssv16530100 | Remapped | Perfect | NC_000012.11:g.(92 12568_9212622)_(92 12875_9212959)del | GRCh37.p13 | First Pass | NC_000012.11 | Chr12 | 9,212,595 (-27, +27) | 9,212,917 (-42, +42) |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Genotype Information
Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
---|---|---|---|
nssv16530100 | 0.001 | 1 | 1706 |