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dbVar

Database of genomic structural variation

nsv4728120

Organism: Homo sapiens

Study:nstd197 (Boujemaa et al. 2021)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh37

Variant Calls:8
Validation:Not tested
Clinical Assertions: No
Region Size:565,518

Publication(s):Boujemaa et al. 2021

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 4625 SVs from 98 studies. See in: genome view

Remapped(Score: Good):21,941,185-22,506,702

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv4728120	Remapped	Good	GRCh38.p12	Primary Assembly	First Pass	NC_000014.9	Chr14	21,941,185	22,506,702
nsv4728120	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000014.8	Chr14	22,409,370	22,975,687

Variant Call Information

Variant Call ID	Type	Method	Analysis	Subject Phenotype
nssv16253450	copy number gain	Sequencing	Read depth	Breast cancer
nssv16253451	copy number gain	Sequencing	Read depth	Breast cancer
nssv16253452	copy number gain	Sequencing	Read depth	Breast cancer
nssv16253457	copy number gain	Sequencing	Read depth	Breast cancer
nssv16253458	copy number gain	Sequencing	Read depth	Breast cancer
nssv16253459	copy number gain	Sequencing	Read depth	Breast cancer
nssv16253460	copy number gain	Sequencing	Read depth	Breast cancer
nssv16253461	copy number gain	Sequencing	Read depth	Breast cancer

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv16253450	Remapped	Good	NC_000014.9:g.2194 1185_22492907dup	GRCh38.p12	First Pass	NC_000014.9	Chr14	21,941,185	22,492,907
nssv16253451	Remapped	Perfect	NC_000014.9:g.2199 7885_22003673dup	GRCh38.p12	First Pass	NC_000014.9	Chr14	21,997,885	22,003,673
nssv16253452	Remapped	Good	NC_000014.9:g.2208 6453_22501663dup	GRCh38.p12	First Pass	NC_000014.9	Chr14	22,086,453	22,501,663
nssv16253457	Remapped	Good	NC_000014.9:g.2212 3528_22506702dup	GRCh38.p12	First Pass	NC_000014.9	Chr14	22,123,528	22,506,702
nssv16253458	Remapped	Good	NC_000014.9:g.2216 3350_22488652dup	GRCh38.p12	First Pass	NC_000014.9	Chr14	22,163,350	22,488,652
nssv16253459	Remapped	Good	NC_000014.9:g.2220 2584_22493990dup	GRCh38.p12	First Pass	NC_000014.9	Chr14	22,202,584	22,493,990
nssv16253460	Remapped	Perfect	NC_000014.9:g.2244 9114_22464322dup	GRCh38.p12	First Pass	NC_000014.9	Chr14	22,449,114	22,464,322
nssv16253461	Remapped	Good	NC_000014.9:g.2245 5250_22488652dup	GRCh38.p12	First Pass	NC_000014.9	Chr14	22,455,250	22,488,652
nssv16253450	Submitted genomic		NC_000014.8:g.2240 9370_22961894dup	GRCh37 (hg19)		NC_000014.8	Chr14	22,409,370	22,961,894
nssv16253451	Submitted genomic		NC_000014.8:g.2246 6124_22471912dup	GRCh37 (hg19)		NC_000014.8	Chr14	22,466,124	22,471,912
nssv16253452	Submitted genomic		NC_000014.8:g.2255 4730_22970647dup	GRCh37 (hg19)		NC_000014.8	Chr14	22,554,730	22,970,647
nssv16253457	Submitted genomic		NC_000014.8:g.2259 1486_22975687dup	GRCh37 (hg19)		NC_000014.8	Chr14	22,591,486	22,975,687
nssv16253458	Submitted genomic		NC_000014.8:g.2263 1246_22957640dup	GRCh37 (hg19)		NC_000014.8	Chr14	22,631,246	22,957,640
nssv16253459	Submitted genomic		NC_000014.8:g.2267 0478_22962976dup	GRCh37 (hg19)		NC_000014.8	Chr14	22,670,478	22,962,976
nssv16253460	Submitted genomic		NC_000014.8:g.2291 8106_22933314dup	GRCh37 (hg19)		NC_000014.8	Chr14	22,918,106	22,933,314
nssv16253461	Submitted genomic		NC_000014.8:g.2292 4242_22957640dup	GRCh37 (hg19)		NC_000014.8	Chr14	22,924,242	22,957,640

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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