nsv4684028
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:4,928,569
- Description:GRCh37/hg19 Yq11.223-11.23(chrY:23887108-28799937)x0 AND Male infertility
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1971 SVs from 51 studies. See in: genome view
Overlapping variant regions from other studies: 1967 SVs from 51 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4684028 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000024.10 | ChrY | 21,725,222 | 26,653,790 |
| nsv4684028 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000024.9 | ChrY | 23,887,108 | 28,799,937 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv16215089 | copy number loss | Multiple | Multiple | Male infertility; Male infertility | Pathogenic | ClinVar | RCV001090072.1, VCV000870515.1 | 0 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16215089 | Remapped | Good | NC_000024.10:g.(?_ 21725222)_(2665379 0_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 21,725,222 | 26,653,790 |
| nssv16215089 | Submitted genomic | NC_000024.9:g.(?_2 3887108)_(28799937 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 23,887,108 | 28,799,937 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv16215089 | GRCh37: NC_000024.9:g.(?_23887108)_(28799937_?)del | copy number loss | unknown | Male infertility; Male infertility | Pathogenic | ClinVar | RCV001090072.1, VCV000870515.1 | 0 |