nsv4676208
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:1,729,089
- Description:GRCh37/hg19 20q13.33(chr20:61152321-62915555)x1 AND not provided
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 10609 SVs from 113 studies. See in: genome view
Overlapping variant regions from other studies: 10556 SVs from 113 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4676208 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000020.11 | Chr20 | 62,555,114 | 64,284,202 |
| nsv4676208 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000020.10 | Chr20 | 61,152,321 | 62,915,555 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv16209004 | copy number loss | Multiple | Multiple | not provided | Pathogenic | ClinVar | RCV001007103.2, VCV000816137.2 | 1 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16209004 | Remapped | Good | NC_000020.11:g.(?_ 62555114)_(6428420 2_?)del | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 62,555,114 | 64,284,202 |
| nssv16209004 | Submitted genomic | NC_000020.10:g.(?_ 61152321)_(6291555 5_?)del | GRCh37 (hg19) | NC_000020.10 | Chr20 | 61,152,321 | 62,915,555 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv16209004 | GRCh37: NC_000020.10:g.(?_61152321)_(62915555_?)del | copy number loss | unknown | not provided | Pathogenic | ClinVar | RCV001007103.2, VCV000816137.2 | 1 |