nsv4457704
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:1,355,021
- Description:GRCh37/hg19 17q11.2(chr17:29054315-30409336)x1 AND not provided
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 4189 SVs from 96 studies. See in: genome view
Overlapping variant regions from other studies: 4190 SVs from 96 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4457704 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000017.11 | Chr17 | 30,727,297 | 32,082,317 |
| nsv4457704 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000017.10 | Chr17 | 29,054,315 | 30,409,336 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15772487 | copy number loss | Multiple | Multiple | not provided | Pathogenic | ClinVar | RCV000847727.2, VCV000687019.2 | 1 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15772487 | Remapped | Perfect | NC_000017.11:g.(?_ 30727297)_(3208231 7_?)del | GRCh38.p12 | First Pass | NC_000017.11 | Chr17 | 30,727,297 | 32,082,317 |
| nssv15772487 | Submitted genomic | NC_000017.10:g.(?_ 29054315)_(3040933 6_?)del | GRCh37 (hg19) | NC_000017.10 | Chr17 | 29,054,315 | 30,409,336 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15772487 | GRCh37: NC_000017.10:g.(?_29054315)_(30409336_?)del | copy number loss | unknown | not provided | Pathogenic | ClinVar | RCV000847727.2, VCV000687019.2 | 1 |