nsv4449985
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:2,332,335
- Description:
GRCh37/hg19 2p25.3(chr2:12770-2348876)x1 AND not provided
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 13516 SVs from 113 studies. See in: genome view
Overlapping variant regions from other studies: 13533 SVs from 113 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nsv4449985 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 12,770 | 2,345,104 |
nsv4449985 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000002.11 | Chr2 | 12,770 | 2,348,876 |
Variant Call Information
Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
---|---|---|---|---|---|---|---|---|
nssv15776261 | copy number loss | Multiple | Multiple | not provided | Pathogenic | ClinVar | RCV000848970.2, VCV000688279.2 | 1 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nssv15776261 | Remapped | Good | NC_000002.12:g.(?_ 12770)_(2345104_?) del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 12,770 | 2,345,104 |
nssv15776261 | Submitted genomic | NC_000002.11:g.(?_ 12770)_(2348876_?) del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 12,770 | 2,348,876 |
No validation data were submitted for this variant
Clinical Assertions
Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
---|---|---|---|---|---|---|---|---|
nssv15776261 | GRCh37: NC_000002.11:g.(?_12770)_(2348876_?)del | copy number loss | unknown | not provided | Pathogenic | ClinVar | RCV000848970.2, VCV000688279.2 | 1 |