nsv3874648
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:242,141,634
- Description:GRCh37/hg19 2p25.3-q37.3(chr2:15672-243101834)x3 AND not provided
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 610150 SVs from 154 studies. See in: genome view
Overlapping variant regions from other studies: 609491 SVs from 154 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3874648 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 15,672 | 242,157,305 |
| nsv3874648 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000002.11 | Chr2 | 15,672 | 243,101,834 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15174602 | copy number gain | Multiple | Multiple | not provided | Pathogenic | ClinVar | RCV000752804.2, VCV000616168.2 | 3 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15174602 | Remapped | Good | NC_000002.12:g.(?_ 15672)_(242157305_ ?)dup | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 15,672 | 242,157,305 |
| nssv15174602 | Submitted genomic | NC_000002.11:g.(?_ 15672)_(243101834_ ?)dup | GRCh37 (hg19) | NC_000002.11 | Chr2 | 15,672 | 243,101,834 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15174602 | GRCh37: NC_000002.11:g.(?_15672)_(243101834_?)dup | copy number gain | unknown | not provided | Pathogenic | ClinVar | RCV000752804.2, VCV000616168.2 | 3 |