| | | Single nucleotide variant (intron variant) | not provided | |
| | | Single nucleotide variant (synonymous variant) | not provided | |
| | MNX1, MNX1-AS2 (L238M +1 more) | Single nucleotide variant (missense variant) | not provided | |
| | | Single nucleotide variant (intron variant) | not provided | |
| | | Single nucleotide variant (synonymous variant) | not provided | |
| | | Single nucleotide variant (intron variant) | not provided | |
| | | Single nucleotide variant (splice acceptor variant) | not provided | |
| | MNX1, MNX1-AS2 (Y265F +1 more) | Single nucleotide variant (missense variant) | not provided | |
| | MNX1, MNX1-AS2 (Q72E +1 more) | Single nucleotide variant (missense variant) | not provided | |
| | MNX1, MNX1-AS2 (L256R +1 more) | Single nucleotide variant (missense variant) | MNX1-related condition | |
| | MNX1, MNX1-AS2 (L278V +1 more) | Single nucleotide variant (missense variant) | MNX1-related condition | |
| | | Copy number loss | Holoprosencephaly 3 | |
| | | Copy number gain | Neurodevelopmental disorder | |
| | | Copy number gain | Neurodevelopmental disorder | |
| | | Single nucleotide variant (synonymous variant) | not provided | |
| | MNX1, MNX1-AS2 (A21fs +1 more) | Deletion (frameshift variant) | not provided | |
| | | Single nucleotide variant (synonymous variant) | not provided | |
| | | Single nucleotide variant (synonymous variant) | Currarino triad | |
| | | Single nucleotide variant (intron variant) | not provided +1 more | |
| | | Single nucleotide variant (intron variant) | not provided | |
| | MNX1, MNX1-AS2 (K270Q +1 more) | Single nucleotide variant (missense variant) | not provided +1 more | |
| | MNX1, MNX1-AS2 (Q251fs +1 more) | Deletion (frameshift variant) | not provided | |
| | MNX1, MNX1-AS2 (F260L +1 more) | Single nucleotide variant (missense variant) | not provided | |
| | MNX1, MNX1-AS2 (S277W +1 more) | Single nucleotide variant (missense variant) | not provided | |
| | MNX1, MNX1-AS2 (L278F +1 more) | Single nucleotide variant (missense variant) | not provided | GConflicting classifications of pathogenicity |
| | | Single nucleotide variant (non-coding transcript variant +1 more) | not provided | |
| | | Deletion | Autism | |
| | MNX1, MNX1-AS2 (R271fs +1 more) | Deletion (frameshift variant) | not provided | |
| | TMEM139-AS1, TMEM140 +1052 more | Copy number gain | See cases | |
| | LOC123956245, LOC123956246 +1025 more | Copy number gain | See cases | |
| | LOC129389937, LOC129389938 +526 more | Copy number loss | See cases | |
| | MIR5707, MIR595 +1046 more | Copy number gain | See cases | |
| | | Copy number loss | See cases | |
| | | Copy number loss | See cases | |
| | LOC129999548, LOC129999549 +1547 more | Copy number gain | See cases | |
| | | Copy number loss | See cases | |
| | LOC129999707, LOC129999708 +225 more | Copy number gain | See cases | |
| | LOC285889, LOC349160 +1025 more | Copy number gain | See cases | |
| | | Copy number gain | See cases | |
| | | Copy number gain | See cases | |
| | LOC129999467, LOC129999468 +944 more | Copy number loss | See cases | |
| | TRC-GCA22-1, TRC-GCA23-1 +540 more | Copy number loss | See cases | |
| | | Copy number loss | See cases | |
| | | Copy number loss | See cases | |
| | LOC129999578, LOC129999579 +538 more | Copy number loss | See cases | |
| | LOC129389950, LOC129999513 +707 more | Copy number loss | See cases | |
| | | Copy number loss | See cases | |
| | LOC129998995, LOC129998996 +2212 more | Copy number gain | See cases | |
| | LOC129999684, LOC129999685 +315 more | Copy number gain | See cases | |
| | | Copy number loss | See cases | |
| | | Copy number loss | See cases | |
| | | Copy number loss | See cases | |
| | | Copy number loss | See cases | |
| | LOC129999734, MNX1 +1 more | Copy number gain | See cases | |
| | | Copy number loss | See cases | |
| | | Copy number loss | See cases | |
| | CCDC146, CCDC201 +4735 more | Copy number loss | See cases | |
| | | Copy number loss | See cases | |
| | | Copy number loss | See cases | |
| | | Copy number loss | See cases | |
| | | Copy number loss | See cases | |
| | LOC129389931, LOC129389932 +573 more | Copy number loss | See cases | |
| | LOC129999649, LOC129999650 +737 more | Copy number loss | See cases | |
| | LOC129999526, LOC129999527 +908 more | Copy number gain | See cases | |
| | | Copy number loss | See cases | |
| | | Copy number gain | See cases | |
| | | Copy number gain | See cases | |
| | LOC123956282, LOC123956283 +173 more | Copy number loss | See cases | |
| | MNX1, MNX1-AS2 (E282* +1 more) | Single nucleotide variant (nonsense) | Currarino triad | |
| | MNX1, MNX1-AS2 (T246S +1 more) | Single nucleotide variant (missense variant) | Currarino triad | |
| | | Single nucleotide variant (splice donor variant) | Currarino triad | |
| | MNX1, MNX1-AS2 (Q259* +1 more) | Single nucleotide variant (nonsense) | Currarino triad | |