U.S. flag

An official website of the United States government

NM_004690.4(LATS1):c.375A>T (p.Lys125Asn) AND Myoepithelial tumor

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Nov 1, 2022
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002463952.1

Allele description [Variation Report for NM_004690.4(LATS1):c.375A>T (p.Lys125Asn)]

NM_004690.4(LATS1):c.375A>T (p.Lys125Asn)

Gene:
LATS1:large tumor suppressor kinase 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
6q25.1
Genomic location:
Preferred name:
NM_004690.4(LATS1):c.375A>T (p.Lys125Asn)
HGVS:
  • NC_000006.12:g.149695195T>A
  • NM_001270519.2:c.375A>T
  • NM_001350339.2:c.60A>T
  • NM_001350340.2:c.60A>T
  • NM_001350392.2:c.-345+6584A>T
  • NM_004690.4:c.375A>TMANE SELECT
  • NP_001257448.1:p.Lys125Asn
  • NP_001337268.1:p.Lys20Asn
  • NP_001337269.1:p.Lys20Asn
  • NP_004681.1:p.Lys125Asn
  • NC_000006.11:g.150016331T>A
  • NR_073033.2:n.829A>T
Protein change:
K125N
Molecular consequence:
  • NM_001350392.2:c.-345+6584A>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001270519.2:c.375A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001350339.2:c.60A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001350340.2:c.60A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_004690.4:c.375A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NR_073033.2:n.829A>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:
Myoepithelial tumor
Identifiers:
MONDO: MONDO:0002380; MeSH: D009208; MedGen: C0027070

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002758724Caryl and Israel Englander Institute for Precision Medicine, Weill Cornell Medicine
no assertion criteria provided
Pathogenic
(Nov 1, 2022)
somaticresearch

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedsomaticyesnot providednot providednot providednot providednot providedresearch

Details of each submission

From Caryl and Israel Englander Institute for Precision Medicine, Weill Cornell Medicine, SCV002758724.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedresearchnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1somaticyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Dec 11, 2022