5C0M


Conserved Protein Domain Family
DUF1325

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pfam07039: DUF1325 
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SGF29 tudor-like domain
This domain is found in the yeast protein SAGA-associated factor 29. This domain is related to members of the Tudor domain superfamily such as pfam05641. The SAGA complex is involved in RNA polymerase II-dependent transcriptional regulation. The membership of the tudor domain superfamily suggests this domain may bind to RNA.
Statistics
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PSSM-Id: 462071
Aligned: 101 rows
Threshold Bit Score: 106.509
Created: 22-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5C0M_A             45 PGDKVAAr-vKAV--DGDEQWILAEVVSYSHATNKYEVDDIDe---------eGKERHTLSRRRVIPLPQWKANPETDp- 111
XP_012191397      175 QGRKVAV---LPSktNEESDWLKASVLSYTKSTNEYTVQDDDep--------gPDGTYKVGMDNIIPLPISLHTMPAS-- 241
XP_002906919      157 vGCHVAA-----KvaRSHELWIMARVVKFNADTNTYEVEDVDagdddeddvdaPRRHYIVPWQQVVEL------PGDSlp 225
XP_002182411      128 PGEQVAA---KVTrtDENGSWILASVQRFYTDTETYDVQDEDd----------TSKLIRLPWSHVMRLSTGAEG------ 188
CBJ26159          132 sGEQVAA---KVTntNENGSWILAEIIRYLAGRACYEVKDADd----------PLKQIEVPDNNVIRLREGGQ------- 191
Q8RXY6            131 KGEQVAAr--VTAedAEKDEWFVVKVIHFDRETKEVEVLDEEpgdd---eeggGQRTYKLSMSCILPFPKRNDPSSTQ-- 203 thale cress
XP_006663959      144 KGEQVAAk--VKSd-EEKDEWVVVKVIHFDKETKEYEVLDEEpgdd----eesaQKKYKLPMSDIIPFPKKGDPSSAP-- 214
jgi:OSTLU_24552   179 VGDLVAAnvgALNqsAGGQEWIVATVTRYSPTEREFEIVDADed--------aEKHVYRLPQKFVIPLPKTASVKQSQ-- 248
jgi:MICPUN_108267  42 PGERVAAnigEVSgdPGAQEWIVAVVVAHKPEEGAYEVMDADees-----ddgSGQVYHIPEDLVIAMPRSALCREGQ-- 114
XP_003057399      190 PGERVAAnigEVTagEGAQEWIVAVVVQYIAEERAYEVMDADedd-----pegGGHVYHLPEHLVIPMPRSASARDGQv- 263
5C0M_A            112 -----EalFQKEQLVLALYPQTTCFYRALIHAPP-----------------QRPQDDYSVLFEDTSYAdgy-spPLNVAQ 168
XP_012191397      242 -----D--YAPGSRVLGMYPDTSCFYGATVKSGGpgltrnanlaklvkkepELLEAKYNLEFDDDNGE------IRQVPA 308
XP_002906919      226 egewiQ--YAVNERVMAMYPNTTSFFRSTIRVPN-----------------PKGAPYVILKFDEDEDEhgf-vpDRKVPF 285
XP_002182411      189 -----C--FKKDNDCMAIFPETTSFYRAKISKDPiwkv---------drlgEPTVKEIIVKFEDDDDAqgr-tpHRRVPA 251
CBJ26159          192 -----G--FAKGDDVLAVFPDTTSFYRGTISKQPvrk--------------aglVAELVVQFEDDADQdtgktpHRRINS 250
Q8RXY6            204 -----E--FIPGKHVLAVYPGTTALYKATVISTPr----------------kRKSDEYLLEFDDDEEDga--lpQRTVPF 258 thale cress
XP_006663959      215 -----D--FGQGRQVLAVYPGTTALYRATVASNr-----------------kRKSDDYLLLFDDDEEDgs--lpQRPVPF 268
jgi:OSTLU_24552   249 -----N--FPAGTSVLAVYPNTTTFYKAKVVQPArr-------------lpNAEYSEFVLEFEDDGDAdg--qaHRPVPF 306
jgi:MICPUN_108267 115 -----N--FHPGTVVLAVYPMTTTFYRAVVVQSArk--------------lGSEYGDFLLEFEDDGDAdg--lpQRPVPY 171
XP_003057399      264 -----N--LSRGTTVLAVYPATTTFYRAVVVQQAqk--------------iNGEFGEFLLEFEDDGDAdg--lpQRPVPF 320
5C0M_A            169 RYVVACK 175
XP_012191397      309 WLVVQSP 315
XP_002906919      286 RFVAPlk 292
XP_002182411      252 RYVIPIP 258
CBJ26159          251 KLVLAQP 257
Q8RXY6            259 HKVVALP 265 thale cress
XP_006663959      269 HRVVPLP 275
jgi:OSTLU_24552   307 RHVVLFP 313
jgi:MICPUN_108267 172 MHVVKHP 178
XP_003057399      321 MHVVRHP 327
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