1LF8,1JPL


Conserved Protein Domain Family
VHS_GGA3

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cd17008: VHS_GGA3 
Click on image for an interactive view with Cn3D
VHS (Vps27/Hrs/STAM) domain of ADP-ribosylation factor-binding protein GGA3
ADP-ribosylation factor-binding protein GGA3 (Golgi-localized, Gamma-ear-containing, Arf-binding 3) regulates the trafficking and is required for the lysosomal degradation of BACE (beta-site APP-cleaving enzyme), the protease that initiates the production of beta-amyloid, which causes Alzheimer's disease. It also plays a key role in GABA (+) transmission, which is important in the regulation of anxiety-like behaviors. GGA3 is a member of the GGA subfamily, which is comprised of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins involved in membrane trafficking between the Trans-Golgi Network (TGN) and endosomes. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (Gamma-Adaptin Ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the Trans-Golgi Network and the endosomal system.
Statistics
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PSSM-Id: 340805
Aligned: 8 rows
Threshold Bit Score: 313.51
Created: 26-May-2015
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 13 residues -Click on image for an interactive view with Cn3D
Feature 1:acidic-cluster-dileucine motif interaction site [polypeptide binding site]
Evidence:
  • Comment:Recognition site of acidic-cluster-dilleucine (DxxLL) signal
  • Structure:1LF8_A; VHS domain of human GGA3 bound to mannose 6-phosphate receptor fragment; contacts at 4A
    View structure with Cn3D
  • Structure:1JPL_A: Human GGA3 VHS domain binds C-terminal peptide of Mannose 6-Phosphate Receptor; contacts at 4A
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
1LF8_A        11 GESLESWLNKATNPSNrqEDWEYIIGFCDQINkELEGPQIAVRLLAHKIQSPQeWEALQALTVLEACMKNCGRRFHNEVG 90  Homo sapiens
1JPL_A        11 GESLESWLNKATNPSNrqEDWEYIIGFCDQINkELEGPQIAVRLLAHKIQSPQeWEALQALTVLEACXKNCGRRFHNEVG 90  human
CAH65038       6 GESLESWLNKATNPSNrqEDWEYIIGFCDQINkELEGPQIAVRLLAHKIQSPQeWEAVQALTVLEACMKNCGRRFHNEVG 85  chicken
AAI67731       6 GETLESWLNKATNPCNrqEDWEYIISFCDQVNkELEGPQIAVRLLAHKIQSPQeWEALQALTVLEASMKNCGRRFHSEVG 85  western clawed ...
XP_005998297   6 GETLESWLNKATNPCNrqEDWEYIIGFCDQINkELEGPQIAVRLLAHKIQSPQeWEAVQALTVLEACMKNCGRRFHNEVA 85  coelacanth
XP_007886975   6 GESLESWLNKATSPANrqEDWEYIIGFCDQVNkELEGPQIAVRLLAHKIQSPQeWEAVQALTVLEACMKNCGRRFHNEVG 85  elephant shark
AAI62763       6 GESLESWLNKATNPSNrqEEWEYIIGFCDQINkELEGPQISVRLLAHKIQSPQeWESLQALTVLEACMKNCGGRFHNEVG 85  zebrafish
Q9NZ52         6 GESLESWLNKATNPSNrqEDWEYIIGFCDQINkELEGPQIAVRLLAHKIQSPQeWEALQALTVLEACMKNCGRRFHNEVG 85  human
Feature 1        ###  #  ##  # ##                            #      #   # #   
1LF8_A        91 KFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPEEAKIKDAYHMLKRQGIVQS 151 Homo sapiens
1JPL_A        91 KFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTXALPEEAKIKDAYHXLKRQGIVQS 151 human
CAH65038      86 KFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTVALPEEYKIKDAYYMLKRQGIVMF 146 chicken
AAI67731      86 KFRFLNELIKVVSPKYLGDRISEKVKSKVIGLLYSWTVALPEETKIKEAYHMLKRQGIILA 146 western clawed frog
XP_005998297  86 KFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTLALPEEPKIKDAYQMLKRQGIVLA 146 coelacanth
XP_007886975  86 KFRFLNELIKVVSPKYLGDRVSEKVKMKVIELLYSWTVALPEETKIKDAYQMLKKQGILQH 146 elephant shark
AAI62763      86 KFRFLNELIKLVSPKYLGDRVSERVKTKVIELLYNCSVALPDEAKIAEAYHMLKKQGIVTK 146 zebrafish
Q9NZ52        86 KFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPEEAKIKDAYHMLKRQGIVQS 146 human

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