Conserved Protein Domain Family
CLN6

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pfam15156: CLN6 (this model, PSSM-Id:405785 is obsolete and has been replaced by 464536)
Ceroid-lipofuscinosis neuronal protein 6
This family of proteins is found in eukaryotes. Proteins in this family are typically between 190 and 310 amino acids in length.
Statistics
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PSSM-Id: 405785
Aligned: 8 rows
Threshold Bit Score: 456.516
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_007231253  28 ASKDTDTPVKKPQFHLDLWCFFTIQNWVLDFGRSIIMILFPLQWFPLNKLIVGDYFHIAYNVITPFLLLKLIDRSPKTLP 107 Mexican tetra
XP_017209599  23 LRELRESCLTPDQFHSCFWCCFTLQNWLLDIGRPVITIFCPLDWFPLNKPSAADYCHMLYNITTPFLLLKLMERSPKTLP 102 zebrafish
XP_005997131  24 gaADGDAPVKKSHFHLDLWFYFTVQNWVLDFGRPVAMIILPLEWFPLNKPSVGDYFHMAYNVITPFLLLKLIERSPKTLP 103 coelacanth
NP_001178723  27 GSAKAEDKDRTAPFHFDLWFYFTLQNWVLDFGRPIAMLVFPIQWFPLNKPSVGDYFHMAYNIITPFLLLKLMERSPRTLP 106 Norway rat
NP_001120230  20 SSAQPDDGSRTSRFHLDLWFYFTVQNWLLDFGRPIVMIILPLDWFPLNKPSAGDYFHMAYNIITPLLLLKLIERSPKTLP 99  tropical clawed...
XP_023187708  18 vCKENAPKRKRQPFHFDLWLCLTLQNWILDFGRPIVMIALPLELFPLNKPSVGDYFHMIYNVVAPFLLLKLIERAPRPVP 97  southern platyfish
XP_029310941  22 GLKENVPQQKRQHFHLDLWFCLTLQNWILDFGRPIVMIILPLEWFPLNKPSAGDYFHMAYNVITPFLMLKLIERSPRALP 101 Cottoperca gobio
XP_019216456  31 gstqveAVRPRPCFHLDLWLSFTFQNWILDVGRPVVMLVLPADWLPLQHPGVADYLHFLYNVTAPLILLKMLERSPRMLP 110 Nile tilapia
XP_007231253 108 VSAVYLCIIAFVMGASINLVGDSMNHRLLLSGYQLHLSVRENPIMKNLNPPSLVDSFELLYYYDEHVGRCLWYIPFFLIL 187 Mexican tetra
XP_017209599 103 RSAMYLCIITFVMGSSIHLLGESINQRLLISGYQTHLTLRENPIIKSISPHTLIDSFELLQYYDESLGLCMWYVPLFLIL 182 zebrafish
XP_005997131 104 RAAVYICIITFVMGASIHLVGDSVNHRLILSGYQLHLSVRENPIIKNLKPEALIDSFELLYYYDENLGHSMWYIPFYLIF 183 coelacanth
NP_001178723 107 RSIIYVSIITFIMGASIHLVGDSVNHRLLFSGYQHHLSVRENPIIKNLKPETLIDSFELLYYYDEYLGHCMWYIPFFLIL 186 Norway rat
NP_001120230 100 NSVIYVSIITFVMGASIHLVGDSVNHRLIFSGYQLHLSVRDNPIMQNLTPPTLVDSFELLYYYDEYLGHSMWYIPFFLIL 179 tropical clawed...
XP_023187708  98 HTAVHLCIITFVMGASIHLVGDSINHRLILSGYQLHLSVRENPIIKDLKPASLIDSFELLYYYDEHLGHLMWYIPFFIIV 177 southern platyfish
XP_029310941 102 RSAVYLCIITFVMGASIHLVGDSINHRLILSGYQLHLSVRENPIIKDLKPASLIDSFELLYYYDEQLGHLMWYIPFFIIL 181 Cottoperca gobio
XP_019216456 111 GLAVRLGIIAVSMGTTLHLVADSITRRLLLIGYQLHLPVRENPIMRNLKPSALVDFFELLFYYDDTVGHMMWYVPFFLVL 190 Nile tilapia
XP_007231253 188 FLYFSGCFTVLKVEKRMPQSAWLLLAPSSLYYWYLVTERQIFILFIFTFFAMTATVMHQKRKGLVPDCNGLFLLYSFSIV 267 Mexican tetra
XP_017209599 183 FLYFTGCFTIVKAEKKMPVSAWILLGPSGLYYWYLVTEGQIFIPFIFTFFAMMATVLHQKRKGFLPDSNGLFLLYSFSIS 262 zebrafish
XP_005997131 184 FLYFTGCFTPIKEDNKMPLSAWLLLGPSGLYYWYLVTEGQIFILYIFTFFAMMAIVMHQKRKGLVLDSNGLFLFYSFSIT 263 coelacanth
NP_001178723 187 FMYFSGCFTTSKAESHMPGPALLLVVPSGIYYWYLVTEGQIFILFIFTFFAMLALVLHQKRRRLLLDSNGLFLFCSFALT 266 Norway rat
NP_001120230 180 FIYFTGCFTKIRAESRMPLSAWALLAPSSLYYWYLVTEGQIFIIFIFTFFAMLAIIMHQRRKGLHLDSNGLFLLFSFSAT 259 tropical clawed...
XP_023187708 178 LIYFSACFSDSDGQEKMPLSGWLLLGASSLYYWYLATEGQITGLFLLTFLAMFTVMIFQKRKGLAPDSNGSFLFYSFSIT 257 southern platyfish
XP_029310941 182 FIYFTGCFTKAKEQKKIPVSGWLLQGPSALYYWYLVTEGQITELFLLTYFAMVVMVIHKQRKGLSPDSNGLFLFCSFSVT 261 Cottoperca gobio
XP_019216456 191 VLFFNGCFSRREQEERMPPSAWMLLAPNAAYYWYLITEGQTFILFTFTFFAMTTTVMHQRRRGLFLNSDGLFMFYSFSAA 270 Nile tilapia
XP_007231253 268 LILLTVWVSCLWNDKILRKKYPGVIYIPEPWAVYTLHIRD 307 Mexican tetra
XP_017209599 263 LFLVSVWVACLWNDKVLRKKYPGVMYIPEPWALYTLHLRD 302 zebrafish
XP_005997131 264 LALIAVWVVWLWNDKILRKKYPGVMYVPEPWAFYSLHIKS 303 coelacanth
NP_001178723 267 LLLVALWVAWLWNDPVLRKKYPGVIYVPEPWAFYTLHVSN 306 Norway rat
NP_001120230 260 LIFIAAWIVWLWNDQILRKKYPGVIYIPEPWAFYTLHVNN 299 tropical clawed frog
XP_023187708 258 LLLVSLWVAYLWDDPVLRNKYPGLFYVPEPWSYYTLHIRK 297 southern platyfish
XP_029310941 262 VLLVALWVIYLWNDPVLRNKYPGLIYVPEPWSYYTLHVKE 301 Cottoperca gobio
XP_019216456 271 LVLVAIWVACLWNDSILRTKVPGLIYIPQPCTVYTLHLHQ 310 Nile tilapia
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