2FV7


Conserved Protein Domain Family
D_ribokin_bact

?
TIGR02152: D_ribokin_bact 
Click on image for an interactive view with Cn3D
ribokinase
This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not. [Energy metabolism, Sugars]
Statistics
?
PSSM-Id: 274000
Aligned: 23 rows
Threshold Bit Score: 349.592
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
?
Program:
Drawing:
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
2FV7_A    31 GSCMTDLVSLTSRLPKTGETIHGH--KFFIGFGGKGANQCVQAARLGa----MTSMVCKVGKDSFGNDYIENLKQNDIST 104 human
Q9H477    22 GSCMTDLVSLTSRLPKTGETIHGH--KFFIGFGGKGANQCVQAARLGa----MTSMVCKVGKDSFGNDYIENLKQNDIST 95  human
CAD73229  14 GSANVDLTFRTPRLPVPGETFAGH--SLHQGMGGKGANQAVVAARLGa----EVAFVARVGNDGFATQAIDAYQTDGINT 87  Rhodopirellula balt...
CAA91318  41 GSIVQDLVSYTDSFPRPGESVRGH--NFKLGSGGKGANQAVAAARLGi----NVSMIGMVGEDMFGDSNIKDLSSNGVDT 114 Caenorhabditis elegans
P36945     8 GSCSMDLVVTSDKRPKAGETVLGT--SFQTVPGGKGANQAVAAARLGa----qVFMVGKVGDDHYGTAILNNLKANGVRT 81  Bacillus subtilis s...
Q9K6K1    10 GSINMDMVTITDVVPVQGETVLGK--DFRTVPGGKGANQAVAAARLGa----nVRMIGRVGDDPFGHVLTENLAKEGIIT 83  Bacillus halodurans...
Q9CF42     8 GSISMDLVTRTNRVPNAGETVFGE--DFAMVPGGKGANQAVAFARLSp---nEVSMIGAVGKDAFGESILQNFKENAVLF 82  Lactococcus lactis ...
BAC93292   8 GSNMVDLISYTDRMPKEGETLEAP--SFKMGCGGKGANQAVAAAKMGa----DVVMVSKVGDDMFADNTIRNFQSYGINT 81  Vibrio vulnificus Y...
CAD63124   8 GSNMIDLTTYIGRMPVEGETIEAP--EFNIGYGGKGANQAIAAARLGs----DVNFITMVGNDGFGQEQLANYQKNGIRT 81  Lactobacillus plant...
O60116     8 GSMNTDLVMRTKICPSGGETIHGEpdGFSTGNGGKGANQAVAVARLSnpadtKVSMLGCVGDDAFGVEMLSGLKKDGVNV 87  Schizosaccharomyces...
2FV7_A   105 EFTYQTKDAATGTASIIVNNEGQNIIVIVAGANLLLNTEDLRAAANVISRAKVMVCQLEITPATSLEALTMARRSGVKTL 184 human
Q9H477    96 EFTYQTKDAATGTASIIVNNEGQNIIVIVAGANLLLNTEDLRAAANVISRAKVMVCQLEITPATSLEALTMARRSGVKTL 175 human
CAD73229  88 SFVQHSKDQPTGTAAILVDDDAENCIIVVAGANAELNADDVRSAKDVIAFSDVVICQLETPVEAALEAFKLARAANVLTM 167 Rhodopirellula balt...
CAA91318 115 SCVGRTKKTHTATATITVNKEGENNIVVTLGANLEMSPEIADANSSKIAGSKMVICQGEIDEKGNRRAFEIARSHGVTTF 194 Caenorhabditis elegans
P36945    82 DYMEPVTHTESGTAHIVLAE-GDNSIVVVKGANDDITPAYALNALEQIEKVDMVLIQQEIPEETVDEVCKYCHSHDIPII 160 Bacillus subtilis s...
Q9K6K1    84 DSVKPVTDCTSGVATILLSD-RDNRIIVTKGANEHVTPDYVAAFEQELAASDVVLLQLEIPLETVAYVLEFCAKHHVTTV 162 Bacillus halodurans...
Q9CF42    83 ENVGTVPQTT-GIAQITLYD-DDNRIIIIPGANNEVLPSYLADLWEKIKESQLVILQNEIPHETNLAIAKFCKENAIKVL 160 Lactococcus lactis ...
BAC93292  82 QYVSKVPQTSSGVAPIFVNSTSQNSILIIKGANEFLKPDDIDKAESTLVECSLIVLQLEVPLETVYAAIEFGNKHSIPVL 161 Vibrio vulnificus Y...
CAD63124  82 DGIG-IGHQNSGVAPIFVDPSSDNRILIIKGANKELTPAVLDEKQALIKNSKLIVLQQEISLETNYHAIDLAQQFGVPVL 160 Lactobacillus plant...
O60116    88 DNVKKIENKSTGVAMIIVEETGENRILLSEGANGNVDTAFVKAMEQRISTCNLLIMQLEIPLEAVEIALQIAHKHGVDVL 167 Schizosaccharomyces...
2FV7_A   185 FNPAPAIAdLDPQFYTLSDVFCCNESEAEILTGLT--VGSAADAGEAALVLLKRGC-QVVIITLGAEGCVVLSQTepEPK 261 human
Q9H477   176 FNPAPAIAdLDpQFYTLSDVFCCNESEAEILTGLT--VGSAADAGEAALVLLKRGC-QVVIITLGAEGCVVLSQTepEPK 252 human
CAD73229 168 LTPAPAELvSD-ELLSLCDVCVPNKTEIAAITGCS--VETQADCAAAAEQLRQRGV-RQVALTMGGEGVLVLDRS--GMS 241 Rhodopirellula balt...
CAA91318 195 LNPAPGDPnMDkTILELVDIICTNENEAEFITGIA--QNNVKDAEKAARAMLKMGP-QHAIITLGGKGVLLASKGvdDVE 271 Caenorhabditis elegans
P36945   161 LNPAPARP-LKQETIDHATYLTPNEHEASILFPEL-------TISEALALYPAK-----LFITEGKQGVRYSAGS--KEV 225 Bacillus subtilis s...
Q9K6K1   163 LNPAPAQK-LPDAAWTDATYISPNENECLQLFGD-----------EPDANLRQK-----LIMTKGADGVQFYEND--EQV 223 Bacillus halodurans...
Q9CF42   161 YNPAPARK-TDLEMIDFVDYITPNEHECKELFPNL-------ALEEILKKYSNR-----LIVTLGSEGVIFHDGE--TLQ 225 Lactococcus lactis ...
BAC93292 162 LNPAPAVPeLDIEYACRCDFFVPNETELEILVNKP--VETVEQIKEAATILLNKGLnN-IIVTMGSKGALWLSKDg-KDV 237 Vibrio vulnificus Y...
CAD63124 161 LNPAPANKnLNIDYVSKVVFFTPNETELATLTGLP--TNNLDEIKVAACDLISRGVeN-LIITLGHKGALWVTEN--HAE 235 Lactobacillus plant...
O60116   168 MNPAPAIP-LSHDMISYCAYLVPNEHEAAILLNQAdsPATLENVDAYASKLLSFGVrKAVIITLGSQGAYYKSANg-ESA 245 Schizosaccharomyces...
2FV7_A   262 HIPTEKVKAVDTTGAGDSFVGALAFYLAYYpnlSLEDMLNRSNFIAAVSVQAAGTQSSYPYKKDLP 327 human
Q9H477   253 HIPTEKVKAVDTTGAGDSFVGALAFYLAYYpnlSLEDMLNRSNFIAAVSVQAAGTQSSYPYKKDLP 318 human
CAD73229 242 LIPASPVKAVDTTGAGDAFTGALAVSLAEGm--SLADAATRAGIVAAISVTRVGTQTSFPSLDEIN 305 Rhodopirellula baltica SH 1
CAA91318 272 HTAVIKVDAVDTTGAGDCFCGSLAAHLVAGhpiSAS--IRSAANLAALSVTRHGTQSSYWKLDEIR 335 Caenorhabditis elegans
P36945   226 LIPSFPVEPVDTTGAGDTFNAAFAVALAEGk--DIEAALRFANRAASLSVCSFGAQGGMPTRNEVE 289 Bacillus subtilis subsp. subtilis...
Q9K6K1   224 QVESFRVEPVDTTGAGDTFNGAFAVALGGG---TVKEAVRFANAAAALSVQSFGAQGGMPTKAQVQ 286 Bacillus halodurans C-125
Q9CF42   226 KIPAIKAKVVDTTGAGDTFNGAFAFGLTENl--SISDSIRLAVVASHLSIQKFGAQGGMPKLSEVK 289 Lactococcus lactis subsp. lactis ...
BAC93292 238 FIEPTKVNAVDTSGAGDAFIGCFSHYFMQTg--DVQKSLEKASLFAAFSVTEKGTQFSYPSIEQFE 301 Vibrio vulnificus YJ016
CAD63124 236 IVPGMKVKAVDTTGAGDSFIGSFAHYFAQGe--AIPDALQHANQYAAMTVMKKGTQKSYPTAAELS 299 Lactobacillus plantarum WCFS1
O60116   246 LVSACKVKAVDTTAAGDTFIGAFSNSIAHGq--PLKDSLEFAAKCSAITVQRKGAASSIPSLLEVD 309 Schizosaccharomyces pombe 972h-
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap