1OCZ,1OCC


Conserved Protein Domain Family
Cyt_c_Oxidase_VIb

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cd00926: Cyt_c_Oxidase_VIb 
Click on image for an interactive view with Cn3D
Cytochrome c oxidase subunit VIb. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIb is one of three mammalian subunits that lacks a transmembrane region. It is located on the cytosolic side of the membrane and helps form the dimer interface with the corresponding subunit on the other monomer complex.
Statistics
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PSSM-Id: 238466
Aligned: 26 rows
Threshold Bit Score: 74.2667
Created: 11-Apr-2003
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site include 1 residue -Click on image for an interactive view with Cn3D
Feature 1:Subunit VIb/I interface [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                      #                                                              
1OCZ_H      7 KIKNYQTAPFDSRFPN-QNQTRNCWQNYLDFHRCEKAMtakGGDVSVCEWYRRVYKSLCP-----ISWVSTWDDRRAEG- 79  cow
NP_497618  44 KKDLLWAAPYDARFPQ-VRKQRQCFAYYVDFHRCNELM---GQDYKPCKFFQNVYKDFCP-----GFWTERWDELLSEG- 113 Caenorhabditis ele...
O94581      8 LNKLLTISYLLYRFPN-TNQTKHCFQSYIDYFRCIKAK---GEDFVPCKQFWHAYQSLCP-----MEWVERWDEQRENG- 77  fission yeast
NP_174548  52 DSGRETDAAVEERFPV-TNETRHCFNRFMQYHKCIEKN---GRDANDCNNLRDYVRSICPeelvsKIWLKSGRNKESQGh 127 thale cress
NP_704818  17 ELTAQNPHASDPRFLQ-VNQFNHCAYRYTLFCRCAREL---GEDHPRCKFQYYRSQIACT-----AEQLEDWDDNRQKG- 86  Plasmodium falcipa...
XP_638480   2 EGEQLQTAPYNPRFPQ-QNQTKHCWANYVDYYGCVKHY---NGDNSKCQTFFNSMNSLCP-----AAWISEWDEQKAAD- 71  Dictyostelium disc...
XP_766109  22 DYTLDNPHAGDPRCLQ-ANNFNYCKLRYTLYCRCCREL---GEDDPRCKYQYYRTELSCT-----QDFLDLVNKHREEG- 91  Theileria parva st...
XP_758790   8 KSYTLQTASFDARFPN-QNQTKHCWQNYVDYHRCINAK---GEDFVPCKQFFRAYNSLCP-----NEWRNDDSCNLKAPa 78  Ustilago maydis 521
ABD64590   63 LEGEMVSAPYDVRFPN-KNQARHCFVRFNEYYKCIHER---GEDHARCQFYQSAYQSLCP-----SDWLENWTELREQG- 132 Chlamydomonas sp. ...
XP_822288  17 PALPHFTDFNDPRFCGtNNKQKNGILAYYQWLHCVGNW---GEEHSMCKKMRWYVERMMQ-----EVWLEKWEEKRALGh 88  Trypanosoma brucei...
Feature 1                  
1OCZ_H     80 --------TFPGK 84  cow
NP_497618 114 --------RFPAK 118 Caenorhabditis elegans
O94581     78 --------TFPAP 82  fission yeast
NP_174548 128 y------qRQYED 134 thale cress
NP_704818  87 --------TCAMD 91  Plasmodium falciparum 3D7
XP_638480  72 --------LFPSD 76  Dictyostelium discoideum AX4
XP_766109  92 --------TCSMD 96  Theileria parva strain Muguga
XP_758790  79 f------nTGIST 85  Ustilago maydis 521
ABD64590  133 --------LWIRK 137 Chlamydomonas sp. ICE-L
XP_822288  89 fdhvllygVKPWK 101 Trypanosoma brucei TREU927

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