1GMX,1QXN,1HZM,1CWS,1DP2,1DP2


Conserved Protein Domain Family
RHOD

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cd00158: RHOD 
Click on image for an interactive view with Cn3D
Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Statistics
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PSSM-Id: 238089
Aligned: 311 rows
Threshold Bit Score: 37.279
Created: 1-Nov-2000
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
active site
Conserved site include 1 residue -Click on image for an interactive view with Cn3D
Feature 1:active site residue [active site]
Evidence:
  • Comment:Cys is active site residue for sulfurtransferase activity
  • Comment:In rhodanase, the domain is duplicated, but only one domain has the active site Cys.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                       
1GMX_A       11 DAHqklq-------ekeAVLVDIRdp--qSFam-------gHAVQAFHLTndtlgaf----------------------- 51  Escherichia coli
AAK73974     49 EAKqlia-------eegYSVVDVRdk--tQFer-------aHIKSCSHIPlfiynedndigtiikrtvhnnfsgl-ffgl 111 thale cress
AAM64600     52 EAKtvva-------segYMLLDVRpa--wERek-------aRVKGSLHVPlfvedpdngpitllkkwihlgyiglwtgqr 115 thale cress
BAD16836     95 EAGytfk-------ltdKVLLDVRps--nERqk-------aWVKGSTWIPvfdvdtsfdlggagkkftnyvmggw-wsgs 157 Japanese rice
NP_197697   225 QTLdllc-------tknYLMVDIRse-kdKEkag-----ipRLPSNAKNRvisipleelpnkvkgivrnsk--------- 282 thale cress
AAS00828    215 QALdmvt-------sqdYVLIDVRte-kdKAktg-----vpQLPSNAKNKlisipleelpskmksmvrnak--------- 272 rice
NP_915156   343 STLellrnddkadlrvkDGIPDLRraarsKYata----aspEIKGSVKRLlksgrdvddalla----------------- 401 Japanese rice
NP_566766   125 NAFrklk------nesdSQLLDIRdv--kTLallaspnlkfLGKSSVQVPfsendeegfl-------------------- 176 thale cress
ZP_00184666  10 EFYklv--------degYIVIDVRsigedEMtg-------lSYKGSHNIPypgvikna---------------------- 52  Mesoplasma floru...
NP_953562    37 HLKamid------ekrdFLLIDARtp--eEYae-------aHIVGAVNVPektfdsas---------------------- 79  Geobacter sulfur...
Feature 1                                 #                                    
1GMX_A       52 -------------mrdndfdTPVMVMXYh----gNSSKGAAQYLlqqgydvVYSIdgGFEAWQ 97  Escherichia coli
AAK73974    112 pftkvnpeflksvrnefsqdSKLLLVCQe----gLRSAAAASRLeeagyenIACVtsGLQSVK 170 thale cress
AAM64600    116 ftmindefalrvveavpdkeSKVLVVCGe----gLRSLAAVSKLhgegyksLGWLtgGFNRVS 174 thale cress
BAD16836    158 stmtvnknfvqqveekfskdTDIIVVCQk----gLRSLAACEQLygagfqnLFWVqgGLEAAE 216 Japanese rice
NP_197697   283 rveaeiaalkisylkkinkgSNIIILDSy----tDSAKIVAKTLkvlgyknCYIVtdGFSGGR 341 thale cress
AAS00828    273 qaeaeiaalkisylkrigkgSNVIIMDSy----cDSSKIVAKTLnsvgfknCWVMagGFSGRK 331 rice
NP_915156   402 --------viirnlklvkgdSKVIIMDAn----gSRSKAIARLLkklgvqrPYLVkgGFQSWA 452 Japanese rice
NP_566766   177 -----------tkvkgsfsdAENTVVCVldnfdgNSSKVAELLIkng-fkeAYYIrgGARGKN 227 thale cress
ZP_00184666  53 ------------erlfpnknEKMIIVCNy----gSRSGLTAKTYrqmgypnVFVLhgGLYELK 99  Mesoplasma florum L1
NP_953562    80 ------------aqlpadkaKLIVLYCNgi--kcGKSKRVAKKVeplgytaIAVYneGMPVWE 128 Geobacter sulfurreducens PCA

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