3D12,2WO2,1KGY,2VSK


Conserved Protein Domain Family
Ephrin-B_Ectodomain

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cd10426: Ephrin-B_Ectodomain 
Click on image for an interactive view with Cn3D
Ectodomain of Ephrin B
Ephrin Bs have several conserved tyrosine phosphorylation sites in their cytoplasmic PDZ-like domain, which are important for signal transduction. Ephrins and their receptors EphR play an important role in cell communication in normal physiology, as well as in disease pathogenesis. Binding of the ephrin (Eph) ligand to EphR requires cell-cell contact, since both molecules are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling, depending on Eph kinase activity) and ephrin-expressing cells (reverse signaling). Eph signaling controls cell morphology, adhesion, migration and invasion. Ephrins can be subdivided into 2 groups, A and B, depending on their respective receptors EphA or EphB. The nine human EphA receptors bind to five GPI-linked ephrin-A ligands and the five EphB receptors bind to three transmembrane ephrin-B ligands. Interactions are promiscuous within each class, and some Eph receptors can also bind to ephrins of the other class. All ephrin Bs contain a highly conserved receptor binding ectodomain described in this model.
Statistics
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PSSM-Id: 259897
Aligned: 12 rows
Threshold Bit Score: 266.234
Created: 13-Jun-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
receptor
Conserved site includes 20 residues -Click on image for an interactive view with Cn3D
Feature 1:receptor binding site [polypeptide binding site]
Evidence:
  • Structure:1KGY; Mouse EphB2-EphrinB2 complex; contacts at 4A
    View structure with Cn3D
  • Structure:2WO2; Human EphA4-EphrinB2 complex; contacts at 4A
    View structure with Cn3D
  • Comment:This site also serves as the interacting surface used by Nipah and Hendra virus glycoproteins, which facilitates attachment of the virus to host cells.
  • Structure:3D12; Mouse EphrinB3 in complex with Nipah virus G attachment glycoprotein; contacts at 4A
    View structure with Cn3D
  • Structure:2VSK; Human EphrinB2 in complex with Hendra virus attachment glycoprotein; contacts at 4A
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                    #                                          ###    # 
3D12_B         1 SLEPVYWNSANKRFQaegGYVLYPQIGDRLDLLCPRARppgphsspSYEFYKLYLVEGA-QGRRCEAppapNLLLTCDRP 79  house mouse
2WO2_B         6 VLEPIYWNSSNSKFLpgqGLVLYPQIGDKLDIICPKVDskt---vgQYEYYKVYMVDKD-QADRCTIkkenTPLLNCAKP 81  human
1KGY_E         2 VLEPIYWNSSNSKFLpggGLVLYPQIGDKLDIICPKVDskt---vgQYEYYKVYMVDKD-QADRCTIkkenTPLLNCARP 77  house mouse
2VSK_B         2 VLEPIYWNSSNSKFLpgqGLVLYPQIGDKLDIICPKVDskt---vgQYEYYKVYMVDKD-QADRCTIkkenTPLLNCAKP 77  human
O73874        26 ILDSIYWNTTNTKFVpgqGLVLYPQIGDKMDIVCPRVEggs---meGVEYYKLYMVPLE-QLKSCQVtkadTPLLNCVKP 101 zebrafish
O13097        24 NLEPVTWNSQNPRFIsgkGLVLYPEIGDRLDIICPKGDss-----qPYEYYKLYMVRRD-QLEACSTvidpNVLVTCNQP 97  African clawed ...
P52796        31 NLEPVSWSSLNPKFLsgkGLVIYPKIGDKLDIICPRAEag-----rPYEYYKLYLVRPE-QAAACSTvldpNVLVTCNKP 104 Norway rat
XP_002198538  31 VLDPIYWNSSNPKFLpgqGLVLYPQIGDKLDIICPKVDskt---igQYEYYKVYMVDKD-QADSCAIkkdnTPLLNCAKP 106 zebra finch
NP_990366     27 SLEPVSWSAGNPKFMsgkGLVIYPEIGDKLDIICPKAEps-----kPYDYYKLYLVKKD-QADACSTvmdpNVLVTCNRP 100 chicken
NP_001079954  29 VLDPIYWNSSNARFLpgqGLILYPKIGDKLDIICPKVDsks---tgQYEYYKIYLVDKE-QADSCTIkd-rTPLLNCAKP 103 African clawed ...
NP_571881     27 NMEPIYWNSLNKRFSddkGYVLYPQIGDRLDLICPSSDppgprapaDYEYYKLYLVSSReQADRCEVtgapNLLLTCDKP 106 zebrafish
NP_990155     31 VLDPIYWNSSNPKFLpgqGLVLYPQIGDKLDIICPKVDskt---vgQYEYYKVYMVDKD-QADSCAIrkdnTPLLNCAKP 106 chicken
Feature 1         ## ### # # ####### #                                        
3D12_B        80 dLDLRFTIKFQEYSPNLWGHEFRSHHDYYIIATSDGTREGLesLQGGVCLTRGMKVLLRVG 140 house mouse
2WO2_B        82 dQDIKFTIKFQEFSPNLWGLEFQKNKDYYIISTSNGSLEGLdnQEGGVCQTRAMKILMKVG 142 human
1KGY_E        78 dQDVKFTIKFQEFSPNLWGLEFQKNKDYYIISTSNGSLEGLdnQEGGVCQTRAMKILMKVG 138 house mouse
2VSK_B        78 dQDIKFTIKFQEFSPNLWGLEFQKNKDYYIISTSNGSLEGLdnQEGGVCQTRAMKILMKVG 138 human
O73874       102 dQDVKFTLKFQEFSPNLWGLEFFRGKDYYIISTSNGTMEGLdnQEGGVCKTKSMKIIMKVG 162 zebrafish
O13097        98 gKEYRFTIKFQEFSPNYMGLEFRRNQDYYITSTSNSTLQGLenREGGVCQTRSMKIIMKVG 158 African clawed frog
P52796       105 qQEIRFTIKFQEFSPNYMGLEFKKYHDYYITSTSNGSLEGLenREGGVCRTRTMKIVMKVG 165 Norway rat
XP_002198538 107 dQDVKFTIKFQEFSPNLWGLEFQKNKDYYVISTSNGSLEGLdnQEGGVCQTKTMKILMKVG 167 zebra finch
NP_990366    101 eQEIRFTIKFQEFSPNYMGLEFKRQQDYFITSTSNGTLDGLenREGGVCQTRSMKIVMKVG 161 chicken
NP_001079954 104 dQDVKFTIKFQEFSPNLWGLEFQRDKDYYIISTSNGSIEGVdnQEGGVCVTKAMKILMKVG 164 African clawed frog
NP_571881    107 nSDMRFTIKFQEYSPNLWGHEFKTNHDYFIIATSDGTRQGLesMRGGVCATQGMKVVLKVG 167 zebrafish
NP_990155    107 dQDVKFTIKFQEFSPNLWGLEFQKNKDYYVISTSNGSLEGLnnQEGGVCQTKTMKILMKVG 167 chicken

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