2KT5,3ULH,1NO8,2YKA,2F3J


Conserved Protein Domain Family
RRM_THOC4

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cd12680: RRM_THOC4 
Click on image for an interactive view with Cn3D
RNA recognition motif (RRM) found in THO complex subunit 4 (THOC4) and similar proteins
This subgroup corresponds to the RRM of THOC4, also termed transcriptional coactivator Aly/REF, or ally of AML-1 and LEF-1, or bZIP-enhancing factor BEF, an mRNA transporter protein with a well conserved RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). It is involved in RNA transportation from the nucleus. THOC4 was initially identified as a transcription coactivator of LEF-1 and AML-1 for the TCRalpha enhancer function. In addition, THOC4 specifically binds to rhesus (RH) promoter in erythroid. It might be a novel transcription cofactor for erythroid-specific genes.
Statistics
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PSSM-Id: 410081
Aligned: 34 rows
Threshold Bit Score: 121.182
Created: 21-Sep-2011
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
peptide binding
Conserved site includes 16 residues -Click on image for an interactive view with Cn3D
Feature 1:peptide binding site [polypeptide binding site]
Evidence:
  • Structure:2KT5; Mus musculus mRNA export adaptor ref2-I bound to HSV-1 ICP27 peptide, contacts at 4A.
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                          ##  ##                               ## #### #####  #    
2KT5_A        36 AKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDrsgrslGTADVHFERrADALKAMKQYKGVPLDGRPMDIQL 110 house mouse
EDO34287      93 SKLSISNLDFGVSDSDISELFSEFGQVKRSCVHYDasgrshGTAKVVFVKrKNAQQALKQYNGVPLDGENYWEYL 167 starlet sea anemone
EGD83489      86 AKLLVENLDYGVTESDIEQLFGAIGQLVDYSIHYDragrslGVAEVEFARsKDAAAAVEEYNGRYLDTKPMKVSF 160 Salpingoeca sp. ATCC...
NP_564871    107 TTVYITNLDQGVTNEDIRELYAEIGELKRYAIHYDkngrpsGSAEVVYMRrSDAIQAMRKYNNVLLDGRPMKLEI 181 thale cress
ADE77937     102 TKLYVSNLDSGVSNQDIKELFTEVGDLKSCALHYDrsgrsnGTAEVVFVKkVDAVAAVKRYNNVQLDGKPMKIEL 176 Sitka spruce
EFJ37904      26 TKLFISNLDHGVSTDDIKELFSEQGDLKRCAVHFDrsgrskCTADVVFARkYDALKAMKHYNNVQLDGKPMKIEC 100 Selaginella moellend...
XP_024377464 108 TKLYISNLDYGVSNDDIKELFSEVGDLKRCSINYDrsgrskGTAEVVFIRkPDALSAMKRYNNVQLDGKPMKIEI 182 Physcomitrella patens
GBF94197     159 NKLFVSNLDFAVCDADIKELFESCGTIKEAGIHYDkggrskGTAHIVFERaEDALKAFQNYNNVALDGKRLNIEL 233 Raphidocelis subcapi...
OUC40999      80 AQLLVSNLNFNVTNDDVKELFQGMGAVRKAAVHYDergrsmGLADVVYHRrVDAMRALKEFNNIKLDGRPMRIEM 154 Trichinella nativa
OSX75842     134 CKIVVHNLHHGVTNGDINDLFSGVGKLQRALVIYDvrgnstGVAEVVFARrDDALESIKRYNGVPLDNKPLRISL 208 laver

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