Conserved Protein Domain Family
Fip1

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pfam05182: Fip1 
Fip1 motif
This short motif is about 40 amino acids in length. In the Fip1 protein that is a component of a yeast pre-mRNA polyadenylation factor that directly interacts with poly(A) polymerase. This region of Fip1 is needed for the interaction with the Th1 subunit of the complex and for specific polyadenylation of the cleaved mRNA precursor.
Statistics
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PSSM-Id: 461573
Aligned: 84 rows
Threshold Bit Score: 67.19
Created: 22-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
ESN97769     215 EFDLESIkiE--DKPWRKPGADLTDYFNYGFTEDTWMKYCERQRRMR 259
XP_002554527 165 DIDPEVL--K--EKPWRQPGANISDYFNYGFNEQTWMEYLHKQEKLR 207
CCA67157     155 DVDIAAL--E--SKAWRRPGADLSDWFNYGFDEISWEAYAARRKQLg 197
Q5KHE4       248 DIDLSLF--EgsGQPWRQPGAVVSDWFNFGFDEHTFPKWVRYRTEMG 292 Cryptococcus neoformans
EKD02446     177 DVDVAQFegS--GQMWRRPGSDISDWFNYGFDEVTYPKFLKYRQDME 221
EEB98991       9 EVDISAM--S--EKPWRRPGSDISDWFNYGFDEISWEAYCYRRREMG 51 
XP_003037006 147 DLDLAAL--A--DKPWRRPGADLSDWFNYGFDEISWEAYCYRRRDLg 189
ELU38027     238 EVDLESL--S--AKSWRRPGANISDWFNYGFDEISWETYCMTRKKLg 280
Q4QJI4        64 GYDIALM--A--KRPWAEPGAKLSDYFNYGFNEQSWRVYCAMQEKGE 106 Leishmania major
Q57Z17        71 GYDIAQM--Q--KRPWDEPTANLRDYFNYGFNESSWRLYCSMQAEGe 113 Trypanosoma brucei
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