Conserved Protein Domain Family
LIM_Eplin_like_1

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cd09486: LIM_Eplin_like_1 
a LIM domain subfamily on a group of proteins with unknown function
This model represents a LIM domain subfamily of Eplin-like family. This family shows highest homology to the LIM domains on Eplin and XIRP2 protein families. Epithelial Protein Lost in Neoplasm is a cytoskeleton-associated tumor suppressor whose expression inversely correlates with cell growth, motility, invasion and cancer mortality. Xirp2 is expressed in muscles and is an important effector of the Ang II signaling pathway in the heart. As in other LIM domains, this domain family is 50-60 amino acids in size and shares two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein.
Statistics
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PSSM-Id: 188870
Aligned: 5 rows
Threshold Bit Score: 98.5003
Created: 9-Nov-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Zn binding site
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Comment:The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. The Zn binding residues of LIM domain are highly conserved.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        #  #                 #  #  #  #                 #  # 
NP_085053     40 CAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPHF 92  human
NP_001006330  41 CTACQKTVYPMERLVADKFVFHNSCFCCKHCHAKLSLGSYAALHGEFYCKPHF 93  chicken
NP_001086272  41 CSSCQKTVYPMERLVADKLIFHNSCFCCKHCSAKLSLGTYAALHGEFYCKPHF 93  African clawed frog
ACQ57894      27 CSSCEKTVYPMERLVANNLVFHSACFCCKHCNAKLSLGTFAALQGGFYCKPHF 79  Anoplopoma fimbria
CAG07233      12 CKSCKKTVYPMEKLVANNLVFHSTCFCCKHCNTKLSLGSFAALHGEFYCKPHF 64  spotted green pufferfish

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