3LQV,2F9D,2F9J,2FHO


Conserved Protein Domain Family
RRM_SF3B14

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cd12241: RRM_SF3B14 
Click on image for an interactive view with Cn3D
RNA recognition motif (RRM) found in pre-mRNA branch site protein p14 (SF3B14) and similar proteins
This subfamily corresponds to the RRM of SF3B14 (also termed p14), a 14 kDa protein subunit of SF3B which is a multiprotein complex that is an integral part of the U2 small nuclear ribonucleoprotein (snRNP) and the U11/U12 di-snRNP. SF3B is essential for the accurate excision of introns from pre-messenger RNA and has been involved in the recognition of the pre-mRNA's branch site within the major and minor spliceosomes. SF3B14 associates directly with another SF3B subunit called SF3B155. It is also present in both U2- and U12-dependent spliceosomes and may contribute to branch site positioning in both the major and minor spliceosome. Moreover, SF3B14 interacts directly with the pre-mRNA branch adenosine early in spliceosome assembly and within the fully assembled spliceosome. SF3B14 contains one well conserved RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain).
Statistics
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PSSM-Id: 409687
Aligned: 37 rows
Threshold Bit Score: 115.028
Created: 13-Sep-2011
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
ligand bindingpolypeptide
Conserved site includes 5 residues -Click on image for an interactive view with Cn3D
Feature 1:ligand binding site [chemical binding site]
Evidence:
  • Structure:3LQV; human pre-mRNA branch site protein p14 (SF3B14) binds Adenine, contacts at 4A.
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             #                                      #                             ###
3LQV_A         7 VNRILYIRNLPYKitAEEMYDIFGKYGPIRQIRVGNTpeTRGTAYVVYEDIfDAKNAVDHLSGFNVSNRYLVVLYYN 83  human
NP_584580      5 ETQILFVRNLPKDvsKDKVVELFGEYGTIVQIRIGVEknTAGSAFVVYSRVeGARKAMRRMNGYYLDGMYLNVGYWQ 81  Encephalitozoon cu...
O59670        10 VNSILFIKNLSFKitAEEMYDLFGRYGPVRQIRLGNTvqTRGTAFVVYENVqDARRACEKLSGYNFMDRYLVVHYYN 86  Schizosaccharomyce...
EGG09720      15 VNRILFVKNLNYKtkGEDLYDLFGKYGAIRQIRIGNDakTRGTAFVVYEDIlDAKNAFDHLNGFHLQERYLVVLYHQ 91  Melampsora larici-...
XP_500857      9 PNNILFVKNLPYEstSDELYELFGRFGAVRQIRAGSEkdTRGTAFVVYEDIdDATEAVKTLSGFNYKNRYLVALFHS 85  Yarrowia lipolytic...
Q8ITY4        17 VNRILYIKNLPYKitTEEMYEIFGKFGAVRQIRVGNTaeTRGTAFVVYEDIfDAKTACEHLSGYNVSNRYLVVLYYQ 93  nematode
XP_001712776  15 SNRILYVRNLPVDvsLEELVTLFERFGEIYQIRIGIQkeTHGTAFIIFKNFyDKNFVSNNISGLTVRNKYIIVLIFF 91  Bigelowiella natans
EAL64324      14 INRILYVKNLPFKisSEELYGIFSNYGAIRQIRLGNTteTMGTAFVVYEDIfDARNACEHLSGYNVNNRYLVVLYYQ 90  Dictyostelium disc...
EAA34891      11 VNRALFVKNLSYNvtPEELFDLFGKYGPIRQVRQGIAsnTKGTAFVVYEDVmDAKQACDKLNGYNFQNRYLVVLYHQ 87  Neurospora crassa ...
CCE81107       4 DLPIVFVKNLPFDssTDSLFELFSQHGEIYQIRIAEDetCKGSCFVVYMNLkDALQASKLLNGINFNGRYLVASMYA 80  Millerozyma farino...

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