2YY0,2YY0


Conserved Protein Domain Family
ZIP_MycBP-like

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cd21937: ZIP_MycBP-like 
Click on image for an interactive view with Cn3D
leucine zipper domain found in c-Myc-binding protein and similar proteins
MycBP, also called associate of Myc 1 (AMY-1), is a novel c-Myc binding protein that may control the transcriptional activity of Myc. It stimulates the activation of E box-dependent transcription by Myc. This model corresponds to the conserved region that shows high sequence similarity with the leucine zipper (ZIP) domain located at the C-terminus of TGF-beta-stimulated clone-22 domain (TSC22D) family transcription factors. The first helix of ZIP is not basic and does not contain the consensus sequence, NXX(A)(A)XX(C/S)R, found in most basic region/leucine zipper (bZIP) proteins. Thus, the DNA-binding capability of the ZIP domain is not obvious. Similar to bZIP, ZIP forms homo- and heterodimers, resulting in many dimers that may have different effects on transcription.
Statistics
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PSSM-Id: 409277
Aligned: 56 rows
Threshold Bit Score: 50.2407
Created: 20-May-2020
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
dimer interface
Conserved site includes 23 residues -Click on image for an interactive view with Cn3D
Feature 1:dimer interface [polypeptide binding site]
Evidence:
  • Comment:leucine zippers form homo- or heterodimers with other leucine zippers
  • Structure:2YY0; Homo sapiens MycBP forms a homodimer, contacts at 4A
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                        #   ## ###### ## ##  ## ##  ## ##  ##
2YY0_A         1 NSALDFLKHHLGAATPEnpeIELLRLELAEMKEKYEAIVEENKKLKAKLAQYE 53  human
XP_001742164  41 ANALEYLQQHLTSEGPVtsdFDVIKQENEELKARNEELTARVEELEAQLAATS 93  Monosiga brevicollis MX1
XP_002676211  37 PNPLDYIKHHLGGPSAEd--IEQLKQENEKLKQRIKDLEEQRNQNEDKKDDDK 87  Naegleria gruberi strain NEG-M
OHT07219      45 EDLLSYVRQFLGSPQGVn--VESLKQENEKLKEEHERLEKRLQELKTQLGISE 95  Tritrichomonas foetus
KAA0148499    43 PNAVEYIKRYLGSAAGTd--VEALRAENERLREENDALAAENDALRAELEAAH 93  Cafeteria roenbergensis
OMJ68225      41 SNAIDFVKRYLGSPADId--VETLRSEYEALKERNSYLEREVAELKDEVTKLR 91  Stentor coeruleus
EPR57439      40 LNALDYIKKYLGAPTGAd--IDALRSEVDSLKKENAGLKARVEQLQQEVDTLR 90  Toxoplasma gondii GT1
KYQ91626      38 SDALEFIKKHLGNSLGVd--VDALKQENADLKAEVAVLTQRVDDLSKKLEAAN 88  Tieghemostelium lacteum
XP_005819809  37 ANALDFIKQYLGAPTSGd--VETMKAEKDEMVKKNEELTRQLEVCSACCVSLF 87  Guillardia theta CCMP2712
OHT17046      36 EDALEYIKQFLGSPNGVd--VESLQKENEELEQQVATLKERVTELKTQLGIEN 86  Tritrichomonas foetus

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