Conserved Protein Domain Family
7tmA_OR5B-like

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cd15407: 7tmA_OR5B-like 
olfactory receptor subfamily 5B and related proteins, member of the class A family of seven-transmembrane G protein-coupled receptors
This group includes human olfactory receptor subfamily 5B and related proteins in other mammals. Olfactory receptors (ORs) play a central role in olfaction, the sense of smell. ORs belong to the class A rhodopsin-like family of G protein-coupled receptors and constitute the largest multigene family in mammals of approximately 1,000 genes. More than 60% of human ORs are non-functional pseudogenes compared to only about 20% in mouse. Each OR can recognize structurally similar odorants, and a single odorant can be detected by several ORs. Binding of an odorant to the olfactory receptor induces a conformational change that leads to the activation of the olfactory-specific G protein (Golf). The G protein (Golf and/or Gs) in turn stimulates adenylate cyclase to make cAMP. The cAMP opens cyclic nucleotide-gated ion channels, which allow the influx of calcium and sodium ions, resulting in depolarization of the olfactory receptor neuron and triggering an action potential which transmits this information to the brain. A consensus nomenclature system based on evolutionary divergence is used here to classify the olfactory receptor family. The nomenclature begins with the root name OR, followed by an integer representing a family, a letter denoting a subfamily, and an integer representing the individual gene within the subfamily.
Statistics
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PSSM-Id: 320529
Aligned: 13 rows
Threshold Bit Score: 395.635
Created: 17-Jan-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
  next features
Feature 1:putative ligand binding pocket [chemical binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                #  ##           ###### #
Q96R09        23 IPLFILFTFIYLLTLCGNLGMMLLILMDSCLHTPMYFFLSNLSLVDFGYSSAVTPKVMAGFLrGDKVISYNACAVQMFFF 102 human
NP_001000257  24 VPLFIIFTLIYLTTLVGNLGMILLIILDSRLHTPMYFFLSNLSFADCVYASAVTPKVIEGFLtEDKIISYNACAAQMFFF 103 Norway rat
NP_001001043  23 VPLFITFSLIYLITLIGNLGMIVLIWLDSRLHTPMYIFLSHLSLADCVYSSSVTPKVMAGFLtGDKVISYGGCVAQMFFF 102 Norway rat
A6NL26        23 IPLLLAFLFIYLITLLGNGGMMVIIHSDSHLHTPMYFFLSNLSLVDLGYSSAVAPKTVAALRsGDKAISYDGCAAQFFFF 102 human
NP_001000252  23 TPLFIIFTLIYFINMTGNLGMLVLILWDSRLHTPMYIFLGNLSLVDIFYSSAVTPTVVAGLLvGNQAISYSACAAQMFLF 102 Norway rat
Q8NGF7        23 VPLFIMFTLIYLITLTGNLGMIILILLDSHLHTPMYFFLSNLSLAGIGYSSAVTPKVLTGLLiEDKAISYSACAAQMFFC 102 human
XP_004683496  23 IPLFFIFMLIYLITLIGNMGMIVLILVDSRLHTPMYFFLSNLSLADLGYSTAVTPKVMAQLLtGSNVISYNACAAQLFFF 102 star-nosed mole
XP_005690382  23 IPLFLVFTLIYLLTLVGNLGVITLILLDSRLHTPMYVLLSHLSLVDFAYSTAVTPKVMAGFLvGDKAISYNACATQLFFF 102 goat
XP_004715043  23 IPLFITFLIIYFLTLVCNLGMILLILLDSRLHTPMYLFLSNLSLADIGYSSAVTPRVMTGLLtGDNVISFYDCAIQLFSF 102 small Madagasca...
XP_005216644  62 VVLFIMFAILYLTHEVGNLGMITLLLLDSCLHNPTHXFFSNLFLENSGYSSAVXPVVMAGLLtGDKIISYNARAAQIFFF 141 cattle
XP_003774545  26 VLLFVIFTLIYIFTLVGNLGLVTLIWVESTLHMPMYFFLSSLSLVDLGSSSAIIPKVLAGILtGDKTISYNDCATQMFFF 105 Tasmanian devil
XP_007519645  26 MPLFLIFTLIYFFTLVGNLGLILLILLDSRLHTPMYFFLSNLLLVDCVYSSAVTPKVLVGLLpGDKVIPSNACAAQMFFF 105 western Europea...
XP_004715041  23 IPFLVTFLVIYLITLVGNLGMMLLLFLDSHLHTPMYFFLSNLSLADFGYSSAVTPKLIVVLLtGDNIISYNDCATQFFFF 102 small Madagasca...
Feature 1        #  #                                            # #####                         
Q96R09       103 VALATVENYLLASMAYDRYAAVCKPLHYTTTMTASVGACLALGSYVCGFLNASFHIGgIFSLSFCKSnlVHHFfCDVPAV 182 human
NP_001000257 104 GVFAIIESFLLASMAYDCHAAVCKPLHYSTTMTTMICSLLLAGSYVSGILQSSIHVAfTFHLSFCHSnvVNHFfCDIPPL 183 Norway rat
NP_001001043 103 VAFASVDCFLLAVMAFDRHAAVCKPLHYTTTMTTSVCARMVIACYAWGLFESAIHTGfTFSLPCCANv-VHHFfCDIPPI 181 Norway rat
A6NL26       103 VGFATVECYLLASMAYDRHAAVCRPLHYTTTMTAGVCALLATGSYVSGFLNASIHAAgTFRLSFCGSneINHFfCDIPPL 182 human
NP_001000252 103 VVFATAENFLLAAMAYDRYAAVCKPLHYTTTMTPTTCACLTIACYAGGFLNSSIHTGdTFRLYFCKSnvVHHFfCDVPAV 182 Norway rat
Q8NGF7       103 AVFATVENYLLSSMAYDRYAAVCNPLHYTTTMTTRVCACLAIGCYVIGFLNASIQIGdTFRLSFCMSnvIHHFfCDKPAV 182 human
XP_004683496 103 AVFLTVETFLLAVMAFDRYAAVCKPLHYATIMTTGVCECLIIGCYAFGFMDASVHIWnIFSLSYCRSnvINHFfCDGPPV 182 star-nosed mole
XP_005690382 103 AVFLAVETFLLASMAYDCHAAACKPIHCSNIMTARVCAWTVVASYGLGFLVASVHTWnAFSLSFCRSrvIGHFsCGATPV 182 goat
XP_004715043 103 GVFAIIESDLLVVMAYDRYVAVCRPLHYNTLVTTKVCAFLCLGCYVLALLDECIHTWnIFRLSFCKSnvIDHFfCDVPPV 182 small Madagasca...
XP_005216644 142 VAFASVEPCLLASVVYDCHTAVHKPLHNTTTTTTHVCAPLTMGSYVCSFLNASFHVGdIFGPSLCKSn-IAHHxCEVPAV 220 cattle
XP_003774545 106 VTFATTENYLLAAMAYDRHVAVSKPLHYSTIMSSKMCLGLTICCYICGSVNSSIHIGfTFSLSFCSSniVNHFfCDIPPI 185 Tasmanian devil
XP_007519645 106 AAFVITECFLLTLMSFDCYIAMCKPLHYTTTMTSTVCAFLIARCYICGLLQSSLDVVfTFCLSFCHSnvVNHFfCDIPPL 185 western Europea...
XP_004715041 103 VTFITVETFLLASMAYDRFIAVCKPLHYTTIMTRKVCAYLVMGPYVCGFLDACIHTWnIFRLSFCRSnvIDHFfCDAPPL 182 small Madagasca...
Feature 1                  #  ### ### ##                                              #  ## ##  #
Q96R09       183 MALSCSDkhtSEVILVFMSSFNIFFVLLVIFISYLFIFITILKMh--sAKGHQKALSTCASHFTAVSVFYGTVIFIYLQP 260 human
NP_001000257 184 LSLSCSSiytNEIVLFMLAAFDVGFTLLVILTSYLLIFVAILRMn--sAESRKKAISTCSSHLTTVSIFYGTIIFMYLQP 261 Norway rat
NP_001001043 182 LALSCSDiyvNEIVLFILASFNVFFALIVILTSYAFIFIAILRMr--sAEGQKKAFSTCASHLTAVTIFYGTVIFMYLQP 259 Norway rat
A6NL26       183 LALSCSDt-rISKLVVFVAGFNVFFTLLVILISYFFICITIQRMh--sAEGQKKVFSTCASHLTALSIFYGTIIFMYLQP 259 human
NP_001000252 183 MVLSCSDrhvSEMILLYGASFVICSALLVILISYIFIFITIFKMr--sTAGYQKAMSTCVSHFTAVSIFYGTLIFMYLQP 260 Norway rat
Q8NGF7       183 ITLTCSEkhiSELILVLISSFNVFFALLVTLISYLFILITILKRh--tGKGYQKPLSTCGSHLIAIFLFYITVIIMYIRP 260 human
XP_004683496 183 LALSCSDihrSEWVLFIFVGINVLISNVVIVVSYLFIFVTVLRMh--sSEGHRKAFSTCASHLTAISIFYGTGIFMYLES 260 star-nosed mole
XP_005690382 183 LALSCSDssrSEMVVFVLVSFNIAFTLLIILISYLFIFVTILRVr--sSEGHRKAFSTCASHLTSISIFYGTGAFMYQQP 260 goat
XP_004715043 183 LAISCSDihsSEIIMFFIVACNAFFSLTVILSSYVLIFATILRMr--sAEGRKKAFSTCAAHLTVVTGLYGTITFAYLKP 260 small Madagasca...
XP_005216644 221 LALSSSHkhiSEVVLVFIMNFNVSFALLIILISLSIQFSSVQSLshalSSGHQKALSTCASHLTAVSIFYGTVIFMDLQP 300 cattle
XP_003774545 186 LTLSCSNirfTELLVCILGAFNMAFAILVIVVSYLSIFIAILRIr--sTEGRQKAFFTCASHIFAVSLFYGATIFMYLQP 263 Tasmanian devil
XP_007519645 186 LELSCSDistNEIVTFKMAAFNLSCFLLVIFSSYLLISVAILRMq--sAEGWRKAFSTCASHLTTVCIFYGTIIFMYLQP 263 western Europea...
XP_004715041 183 LTISCSDryiTELVIFCVVSFNVLSSIAVILISYLFILTTILRMr--sSEGRHKAFSTCASHLTTVSIFYGTASFMYLQP 260 small Madagasca...
Feature 1             ## ###  #  ##                       
Q96R09       261 sSSHSMDTDKMASVFYAMIIPMLNPVVYSLRNREVQNAFKK 301 human
NP_001000257 262 sSSHSMDTDKMASVFYTMVIPMLNPIVYSLRNKEVKNAFKK 302 Norway rat
NP_001001043 260 sSSHSMDNDQMASVFYTMVVPMLNPVVYSLRNKEVHNAFKK 300 Norway rat
A6NL26       260 nSSQSVDTDKIASVFYTVVIPMLNPLIYSLRNKEVKSALWK 300 human
NP_001000252 261 sSHHSMDTDKIVSVFYTMVIPMLNPVVYSLRNKEVKSAFKK 301 Norway rat
Q8NGF7       261 sSSHSMDTDKIASVFYTMIIPMLSPIVYTLRNKDVKNAFMK 301 human
XP_004683496 261 nASHSMGSDKLASMFYAIVIPMLNPLVYSLRNKEVKSAFKR 301 star-nosed mole
XP_005690382 261 gSRHSMSTDKMASVFYALVVPMVNPLICSLRNKEVKRALKK 301 goat
XP_004715043 261 sSGHSMDLDKLASLFYSIVLPMLNPLVYSVRNKEVKSAFIK 301 small Madagascar hedgehog
XP_005216644 301 sSRHSTDPHKVASVFYSVLIPMLTSVGYSLGNMEVKEQAHN 341 cattle
XP_003774545 264 sSNHSMESDKMISVFYTMIIPMLNPLVYSLRNKDVKNAFIK 304 Tasmanian devil
XP_007519645 264 nSNHSMDTDKMASVFYTIIIPTLNPLVYSLRNKEFKSAFSK 304 western European hedgehog
XP_004715041 261 rYSHSMGTDKMASLFYAIFVPMLNPLIYSLRNKEVKAAFQR 301 small Madagascar hedgehog

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