1Y5M,1XU7,3D5Q,3CH6,2RBE,2IRW,2BEL,3DWF,3G49,1XSE,2ILT


Conserved Protein Domain Family
11beta-HSD1_like_SDR_c

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cd05332: 11beta-HSD1_like_SDR_c 
Click on image for an interactive view with Cn3D
11beta-hydroxysteroid dehydrogenase type 1 (11beta-HSD1)-like, classical (c) SDRs
Human 11beta_HSD1 catalyzes the NADP(H)-dependent interconversion of cortisone and cortisol. This subgroup also includes human dehydrogenase/reductase SDR family member 7C (DHRS7C) and DHRS7B. These proteins have the GxxxGxG nucleotide binding motif and S-Y-K catalytic triad characteristic of the SDRs, but have an atypical C-terminal domain that contributes to homodimerization contacts. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.
Statistics
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PSSM-Id: 187593
Aligned: 40 rows
Threshold Bit Score: 304.509
Created: 22-Jan-2007
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                     
1Y5M_A     16 LQGKKVIVTGASKGIGREMAYHLSKMGAHVVLTARSEEgLQKVVSRCLELGAas-----aHYIAGTMEDMTFAEQFIVKa 90  house mouse
1XSE_A     30 LQGKKVIVTGASKGIGREIAYHLAKMGAHVVVTARSKEaLQKVVARCLELGAas-----aHYIAGSMEDMTFAEEFVAEa 104 domestic guinea pig
XP_977206  29 FEGKTVWITGASSGIGEQLAKDFSRLGASLIISSRKIQdLEKVKSQCKDPSKv-------TVLPLDMSKTKEVIKQTEDf 101 Tetrahymena thermo...
A9UM79     35 LKNKVVVITDAISGLGKECSRVFHSAGARLVLCGKTWEkLEALHDALISVADpsvt-ftpKLVLLDISDINNMEAMGKEi 113 western clawed frog
A6NNS2     35 VQNKVVVITDAISGLGKECARVFHTGGARLVLCGKNWErLENLYDALISVADpskqtftpKLVLLDLSDISCVPDVAKEv 114 human
NP_651717  51 LPGKVVLITGASSGLGESLAHVFYRAGCRVILAARRTQeLERVKKDLLALDVdpa--yppTVLPLDLAELNSIPEFVTRv 128 fruit fly
NP_714232   6 FLEKSFLVTGASSGIGRALVLELNRNGAVVGAIARRKElLKELKSEAKFPDKi-------ISFPGDVSDLSQLKKITEEf 78  Leptospira interro...
Q0IH28     34 LQAAVVVITGATSGLGKECAKVFYAAGSHLVLCGRDEErLKDLVQELNNMRLkstqlhkpHMVIFDLSDVEAVNTAAKEi 113 African clawed frog
Q6IAN0     50 LRNAVVVITGATSGLGKECAKVFYAAGAKLVLCGRNGGaLEELIRELTASHAtkvqthkpYLVTFDLTDSGAIVAAAAEi 129 human
Q566S6     35 IQDKVVVITGASSGLGKECARVFHAAGARLILCGRDQRrLQEVVEELGNKTYgktktytpCTVTFDLSNTSVVCSAAAEi 114 zebrafish
Feature 1                                              #                           #          
1Y5M_A     91 g----klMGGLDMLILNHITQTSlSLFHDD-IHSVRRVMEVNFLSYVVMSTAALPMLK-QSNGSIAVISSLAGKMTQPMI 164 house mouse
1XSE_A    105 g----nlMGGLDMLILNHVLYNRlTFFHGE-IDNVRKSMEVNFHSFVVLSVAAMPMLM-QSQGSIAVVSSVAGKITYPLI 178 domestic guinea pig
XP_977206 102 ikdlekqNKKLDIVIENAGVSMR-SEFKDYsYENHEYMTNLNYNGPVAHVKGLLDHFIrNKSGHIVLINSIAGLLSPGMR 180 Tetrahymena thermo...
A9UM79    114 q----dcYGCVDVLINNASMKMK-GPLQSVsLELDKKIMDANYFGPITLVKAILPHMIsRRTGQIVLVNTIQGKIGVPFR 188 western clawed frog
A6NNS2    115 l----dcYGCVDILINNASVKVK-GPAHKIsLELDKKIMDANYFGPITLTKALLPNMIsRRTGQIVLVNNIQGKFGIPFR 189 human
NP_651717 129 l----avYNQVDILINNGGISVR-ADVASTaVDVDLKVMVVNYFGSVALTKALLPSMVkRGSGHICFISSVQGKFAIPQR 203 fruit fly
NP_714232  79 r----kkVRRIDGMIHSAGISMR-GLAKETdIKVYENLMNINFYPLVHLFKLLESELR-QNQGHFIAVSSLQGRFATQYR 152 Leptospira interro...
Q0IH28    114 l----hlAGRVDILINNAGISYR-GTILDTkVSVDRMVMDTNYFGPVALTKALLPSMIkNRRGHVVVISSVQGKISIPFR 188 African clawed frog
Q6IAN0    130 l----qcFGYVDILVNNAGISYR-GTIMDTtVDVDKRVMETNYFGPVALTKALLPSMIkRRQGHIVAISSIQGKMSIPFR 204 human
Q566S6    115 l----krHGHVDVLINIAGVSYR-GNILDThVSVQREVMETNYFGPVALTQAILPSMVdRGSGHIVVISSVQGKISIPYR 189 zebrafish
Feature 1       #   #                                                                         
1Y5M_A    165 APYSASKFALDGFFSTIRTELyitkVNVSITLCVLGLIDTETAMKEISGIINAqa----------sPKEECALEIIKGTA 234 house mouse
1XSE_A    179 APYSASKFALDGFFSTLRSEFlvnkVNVSITLCILGLIDTETAIKATSGIYLGpa----------sPKEECALEIIKGTA 248 domestic guinea pig
XP_977206 181 TSYVGSKHALRGFFDSLRAEVs--eFNIKVSSIYPGYVQTNVSANALSGEAGQsfgktdgniqegeTIEKFAEQAMLAIY 258 Tetrahymena thermo...
A9UM79    189 AAYAASKHAIQGFFDCLRAEVe--eFDVSVSTVSPTFIRSYHVQPQPGNWEASiwkfffrklsygaHPVEVAEEVLSTVS 266 western clawed frog
A6NNS2    190 TTYAASKHAALGFFDCLRAEVe--eYDVVISTVSPTFIRSYHVYPEQGNWEASiwkfffrkltygvHPVEVAEEVMRTVR 267 human
NP_651717 204 AAYSASKHAMQAFADSLRAEVa--nKNINVSCVSPGYIRTQLSLNALTGSGSSygkvde-ttakgmSPDKLAERILQCIL 280 fruit fly
NP_714232 153 SGYAASKHAVQAFMDSIRLETc--eSGMHVMTVSPGYVKTDISLKALSGDGSAygimde-giknglATEKVATIILKAIE 229 Leptospira interro...
Q0IH28    189 SAYSASKHATQAFFDCLRAEMs--pYDIDVTVVNPGYIKTNLSLNAVTGDGSGygvmdk-ntadgrTPEEVAQTVLRAVG 265 African clawed frog
Q6IAN0    205 SAYAASKHATQAFFDCLRAEMe--qYEIEVTVISPGYIHTNLSVNAITADGSRygvmdt-ttaqgrSPVEVAQDVLAAVG 281 human
Q566S6    190 SAYAASKHAMQAYYDCLRAEVd--sLGLHVSVLSPGYVRTNMSINAVTGDGSKygvmdr-ttatgaDPVDVAKDILKAVC 266 zebrafish
Feature 1                                    
1Y5M_A    235 LRKSEVYYDksp--ltpILLGNPGRKIMEFF 263 house mouse
1XSE_A    249 LRQDEMYYVgsr--wvpYLLGNPGRKIMEFL 277 domestic guinea pig
XP_977206 259 KQKNDAVITksikhelgVYMRNVSFDLVHWL 289 Tetrahymena thermophila SB210
A9UM79    267 RKKQEVFMAnpip-raaVYIRTFLPELFFAV 296 western clawed frog
A6NNS2    268 RKKQEVFMAnpip-kaaVYVRTFFPEFFFAV 297 human
NP_651717 281 RKEPDIIVSdvqa-kiaYYLRHLCPSLYFWI 310 fruit fly
NP_714232 230 SRKRDVYPSqfre-mlaYWISRFSPSLLDRL 259 Leptospira interrogans serovar Lai str. 56601
Q0IH28    266 ERRKELLVAglvp-tlaVYLRTLAPTLFFSI 295 African clawed frog
Q6IAN0    282 KKKKDVILAdllp-slaVYLRTLAPGLFFSL 311 human
Q566S6    267 QKKKDVVMAglgp-ttaIYLRTLWPALYFRV 296 zebrafish

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