Conserved Protein Domain Family
rfc

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PRK00440: rfc 
replication factor C small subunit; Reviewed
Links
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Statistics
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PSSM-Id: 234763
Aligned: 72 rows
Threshold Bit Score: 518.274
Created: 9-Dec-2010
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
21227923   11 KEEIWIEKYRPVRLNQVAGQEETIERLMSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGEDlWRENFTELNASDERG 90 
11499642    3 NFEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN-WRDNFIEMNASDERG 81 
15791090    8 RQEIWVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASSVSIAKELYGDD-WQDNFLELNASDERG 86 
169236842   8 RQEIWVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASSVSIAKELYGDD-WQDNFLELNASDERG 86 
13542322    1 MIEIWTEKYRPKSLSEIYGEDENIQKLKSFVEKKELPHLLFAGSVGTGKTSTAIALAIELFGES-WKENFIEMNASNENG 79 
16082630    1 MIEIWTEKYRPKSLSEIYGEDENIQKLKSFVEKKEIPHLLFAGSVGTGKTSTAIALAIELFGDS-WKENMVEMNASNENG 79 
48477659    1 MINIWTEKYRPKRLDDVIGEDENINTLKSFVKNGDLPHLIFAGPAGTGKTSTAIALTIELFGDD-WKENFLELNASDERG 79 
288931716   2 ETEIWVEKYRPKTLDEVVGQDEIIQRLKSYVKQKNIPHLLFAGPPGTGKTATAIALARDLFGEV-WRENFIEMNASDERG 80 
284163322  15 RTEVWIEKYRPERLDEIKGHENIVPRLKQYVERDELPNLMFAGPAGTGKTTAAVGIAREIYGDD-WRENFLELNASDQRG 93 
300709601  14 REEIWVEKYRPGTLGEVIGQEEITDRLERYVERDDLPNLLFSGSAGIGKTTCATAIAREVYGED-WRDNFLELNASDDRG 92 
21227923   91 IDIVRNKIKNFAKTAPMGgAPFKIIFLDEADALTSDAQSALRRTMEKFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRL 170
11499642   82 IDVVRHKIKEFARTAPIGgAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPV 161
15791090   87 IDVVRDRIKDFARSS-FGgHNYRVIFLDEADALTDDAQSALRRTMEQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFAQL 165
169236842  87 IDVVRDRIKDFARSS-FGgHNYRVIFLDEADALTDDAQSALRRTMEQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFAQL 165
13542322   80 IDVIRNKIKDIARIRPSNpLGFKILFLDEADQLTAEAQAALRRTMEMYSETTRFVFACNYSSKIIPPIQSRTVVMRFRPV 159
16082630   80 IDVIRNKIKDIARIKPSNpLGFKILFLDEADQLTAEAQAALRRTMEIYSETTRFIFSCNYSSKIIPPIQSRTVVMRFRPV 159
48477659   80 IDIIRNNIKDFAKIRPSNkLGFKIIFLDEADQLTNEAQAALRRTMEMFYSTTRFIFSCNYSSKIIPPIQSRCVVLRFRPL 159
288931716  81 IDVVRHKIKEFARTAPIGgAPFKIIFLDEADALTADAQAALRRTMEMYSKVCRFILSCNYVSRIIEPIQSRCAVFKFKPV 160
284163322  94 IDVVRDRIKDFARSS-FGgYSHRIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTEL 172
300709601  93 IDVVRGRIKEFARAS-FGgYSYRIIFLDEADSLTSDAQSALRRTMEQFSSNTRFILSCNYSSKIIDPIQSRCAVFRFSPI 171
21227923  171 SDKAIRERLEYIAKEQDLSITDGGYEALIYVAQGDMRKAVNSLQAAAFIDveKPISRETIYRTTATANPEEIKNLIETAL 250
11499642  162 PKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITATARPEEMTELIQTAL 239
15791090  166 GDDAVAAHLREIAETEGLEHTDDGIDALVYAADGDMRRAINALQAASATG--DSVNEETVYAITATARPEEIETMVTEAL 243
169236842 166 GDDAVAAHLREIAETEGLEHTDDGIDALVYAADGDMRRAINALQAASATG--DSVNEETVYAITATARPEEIETMVTEAL 243
13542322  160 QDEFIKKKLNEIAKNEGFTIDDESMEAMVEVSGGDMRKAINVLQAVYTSG---EISPKKIYEIIGYASPESVNKLISRAI 236
16082630  160 PDEYISRKLQEIAKNEGFQIDEESMHALVEVSAGDMRKAINVLQAVYTSG---EISPKKIYEIIGYASPEKIQKMISRAI 236
48477659  160 DKEAMERKLREIAKNEKFDIDDDSLDAIYEISDGDMRKAINVMQAIQSTG---EIKPSKIYEISGEINKNEYKNLISLSL 236
288931716 161 PKEAMKKRLKEIAENEGLEIDDEALEVLIYISGGDFRKAINALQGAAALD--KRITPEILYQITATARPEELRKIIDTAL 238
284163322 173 TEDAIEAQVREIAANEGIEVTDDGVDALVYAADGDMRKAINGLQAAAVMG--ETVDEETVFAITATARPEEVEKMVEHAI 250
300709601 172 SDAAVGERIREIAHIEGIEITDGGVEALVYAADGDMRRAVNSLQAAAVMG--ETVDEEVVYTITATARPEEIEAMVTSAL 249
21227923  251 RGNFRVARKELNRLLYEEGLSGEDIVGQIYRVvsemdnlmILDLGLSERDIVGLVDIIGETDFRLTEGASEKIQLEALLA 330
11499642  240 KGNFMEARELLDRLMVEYGMSGEDIVAQLFRE--------IISMPIKDSLKVQLIDKLGEVDFRLTEGANERIQLDAYLA 311
15791090  244 GGDFAAARATLDDLLTNRGLAGGDIIDQVHRS--------VWEFDVEEAAAVRLLDRLGEADYRIAEGANERVQLEALLA 315
169236842 244 GGDFAAARATLDDLLTNRGLAGGDIIDQVHRS--------VWEFDVEEAAAVRLLDRLGEADYRIAEGANERVQLEALLA 315
13542322  237 NGLFDEARQIVDKMMIEDGLSGIDIVKSVHSI--------VRASVVPPKQKIEIIKALADAEFRIVEGSNDRIQLDALIA 308
16082630  237 NGLFDEAREIVDGMLIYDGLSGIDIVRSLHSY--------VRSSMISPKQKIEIIKALADAEFRIVEGSNDRIQLDALIA 308
48477659  237 NGAFSDAKSLLDKMLVDYGLSGIDIIRGMHSA--------IRNERIANRQKLEILIALAEFEFRISQGGSDNVQMDALLA 308
288931716 239 KGNYLQAKDMLENLMAEYGMSGEDVVSQLFRE--------IMYSNLDEKLKVVLIDKLGEIDFRLTEGASELIQLNAYLA 310
284163322 251 DGDFTAARAALEDLLTERGLAGGDVIDQLHRS--------AWEFDIPEMATVRLLERLGEVDYRITEGANERLQLEAMLA 322
300709601 250 EGDFTTARATLDDLLSNKGLSGGDIIDQLHRS--------VWDLGLSDREAVRTLDRIGETDYRITEGANERIQLEAFLA 321
21227923  331 HFA 333
11499642  312 YLS 314
15791090  316 SVA 318
169236842 316 SVA 318
13542322  309 RIA 311
16082630  309 KLA 311
48477659  309 RIS 311
288931716 311 FLS 313
284163322 323 SLA 325
300709601 322 SLT 324
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