2UYR,1ZWX,2DDS,2DDT,2DDR,3I5V


Conserved Protein Domain Family
nSMase

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cd09078: nSMase 
Click on image for an interactive view with Cn3D
Neutral sphingomyelinases (nSMase) catalyze the hydrolysis of sphingomyelin in biological membranes to ceramide and phosphorylcholine
Sphingomyelinases (SMase) are phosphodiesterases that catalyze the hydrolysis of sphingomyelin to ceramide and phosphorylcholine. Eukaryotic SMases have been classified according to their pH optima and are known as acid SMase, alkaline SMase, and neutral SMase (nSMase). Eukaryotic proteins in this family are nSMases, and are activated by a variety of stress-inducing agents such as cytokines or UV radiation. Ceramides and other metabolic derivatives, including sphingosine, are lipid "second messenger" molecules that participate in the regulation of stress-induced cellular responses, including cell death, adhesion, differentiation, and proliferation. Bacterial neutral SMases, which also belong to this domain family, are secreted proteins that act as membrane-damaging virulence factors. They promote colonization of the host tissue. This family belongs to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds.
Statistics
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PSSM-Id: 197312
Aligned: 60 rows
Threshold Bit Score: 146.718
Created: 5-Feb-2010
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:putative catalytic site [active site]
Evidence:
  • Comment:based on Listeria ivanovii SmcL and on other EEP superfamily members with structure; highly conserved in the EEP superfamily
  • Structure:1ZWX_A: Listeria ivanovii SmcL binds a phosphate ion in the catalytic site, contacts at 4A
    View structure with Cn3D
  • Comment:phosphate ion is believed to mimic the substrate phosphate in the protein-sphingomyelin complex
  • Comment:The two His residues are the putative catalytic acid and base

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              #                                                     #                   
2UYR_X        10 LKVMTHNVYMLStnly-----------------pnwGQTERADLIGAADyiknqDVVILNEVFDAsASDRLLGNlkk-ey 71  Bacillus cereus
1ZWX_A        11 FKITSHNVYLFSrniy-----------------pnwGQMHRADLIAQADymknnDVVILNEAFDTsASHRLLNNlre-my 72  Listeria ivanovii
XP_429344    319 VDQSTVNNKLLYkasimkkts------vrkkkhtdeTFDHEISAFFPANl----DFLCLQEVFDKrAAEKLKEQlhhyfe 388 chicken
NP_001116222 338 GGISPNNTLSQHrtsvfkrpi------grkrrhgddGFDHEISAFFPANl----DFLCLQEVFDRrAADRLRRQlhryfp 407 zebrafish
O35049       312 SGEPGSNSKLLYktsvvkkaa------arrrrhpdeAFDHEVSAFFPANl----DFLCLQEVFDKrAAAKLKEQlhgyfe 381 Norway rat
BAG12869     202 PDAIEVNEITPKpncnqnsnhqkhpprslrtllrdaDIPMEVSALFPPSv----DIVCLQEVFDKrAARKLTQAlgplyg 277 zebrafish
NP_001089663 316 ADQSSINTKLLHktsiikkat------arkkkhtddILDHEISAFFPANl----DFLCLQEVFDKrAAEKLKEQlhyyfe 385 African clawed ...
XP_002587512 150 TQNGRPNGSLHGetpynlrsrkg--grpahqppqreQFAHTVESQFPEDl----DFLCCQEVFDQdATRRLVAGlrqhfg 223 Florida lancelet
XP_002128155 250 EPIAGENIDSRSitsaq---------------wsitSKERTVSENFSFIa----DFLCLQEVFDGrSTNQLIQGlkrkyp 310 Ciona intestinalis
XP_782298    241 GPSTPGNTNPRStitrcpmsfc----sqssirerlgPCEHGISSNFPAHl----DFICFQEVFEQrAADRLIHIlhnyfs 312 purple urchin
Feature 1                                      #                                                 
2UYR_X        72 PNQTAVLGRssgsewdktlgnyssstpEDGGVAIVSKWPIaEKIQYVFAKGCGPDNLSNKGFVYTKIKKNd------rFV 145 Bacillus cereus
1ZWX_A        73 PHQTPVIGRskhgwdkte-gnysnfalEDGGVAVVSQWPIvEKSQHIFQRGGGADRLSNKGFAYVKIMKNg------kPY 145 Listeria ivanovii
XP_429344    389 YIVYDVGVYgchac--------csfkfVNSGLLFASRYPVmDAAYHCYPNGKGTDSLASKGALFLKVQVGstpqdqriVG 460 chicken
NP_001116222 408 FVLSDVGRYgwkgcc-------srfkfLNSGLLLASRYPIlDAHYECFPNGRSEDALAAKGVLFAKVQVGssaqdqrvVG 480 zebrafish
O35049       382 YILYDVGVYgchgc--------cnfkcLNSGLFFASRYPVmDVAYHCYPNGCSFDALASKGALFLKVQVGstpqdqriVG 453 Norway rat
BAG12869     278 HVLYDVGVYachpags-----cssfkfFNSGLFLASRFPImEAEYRCFPNGRGEDALAAKGLLTVKVDIGlqkgekrmVG 352 zebrafish
NP_001089663 386 YVLYDVGVYschgc--------cgfkfLNSGLLFASRYPIlDATYHCYPNGRGIDALAAKGALFIKVQVGttpqdqriVG 457 African clawed ...
XP_002587512 224 HVIYDPGRWswst----------nlwaFHSGLLFASRYPVlSAEYRPFSAARKQDRWAAKGALMVKVLLGrtqdsqdaVG 293 Florida lancelet
XP_002128155 311 YIIYDVSQPlhnc----------rmtlLGSGLCIASLHPFiDISFKPYPDGHNDDKLACKGLLMTKVFLGkddrghdlVG 380 Ciona intestinalis
XP_782298    313 YILYDVGVNswsv----------nrflLNSGLVFGSRYPIvDVVFEYFQESQKEDRFVSKGVLMIKVHLGrsddghpvVG 382 purple urchin
Feature 1             #                                                        # #               
2UYR_X       146 HVIGTHLQAedsmcgktspasVRTNQLKEIQDFIknkni-------------pnneYVLIGGDMNVNKinaennndseYA 212 Bacillus cereus
1ZWX_A       146 HIIGTHTQAddsliskdtsraIRAEQMQEIQTFIakkni-------------pkdeIIFIGGDLNVNYgt------deYH 206 Listeria ivanovii
XP_429344    461 YISCTHLQAiag------dttVRCEQLDMLQDWLsefrkstsss--stanpeelvaFDVICGDLNFDNc--------sSE 524 chicken
NP_001116222 481 YITCTHLHAieg------daaVRCEQLDMLLEWGaefrrvtscpadeekvledqvaFDVILGDLNFDNc--------sSE 546 zebrafish
O35049       454 YIACTHLHAppe------dsaIRCEQLDLLQDWLadfrkstsst--stanpeelvvFDVICGDLNFDNc--------sSD 517 Norway rat
BAG12869     353 FINCTHLHApeg------dgaIRFEQLNMLSKWTsefqtlnr-------rddelplFDVLCGDFNFDNc--------sPD 411 zebrafish
NP_001089663 458 YISCTHLHAlag------davTRCEQLDMLQEWVsefrkstsss--saanpeelvaFDVICGDLNFDNc--------sSE 521 African clawed ...
XP_002587512 294 YITTTHMQSyqg------pfeILPRQLDELMTWTedfrrrtl-------gddviqvFDILCGDFNFDNm--------sPG 352 Florida lancelet
XP_002128155 381 YLATTHLQAwshs----hastVRCKQLDSIYSWMeefklnsatr---dgntsekvlFNVITGDFNFDKa--------sYY 445 Ciona intestinalis
XP_782298    383 YVAITQLQAaqk-------ddLRSAQMDAILKWLnnfhvyshr----leglqevvaFDVLCGNFNFDNm--------sPS 443 purple urchin
Feature 1                                                                                        
2UYR_X       213 SMFKtl-------nASVPSytg-htATWDAttnsiak------------------------------------------- 241 Bacillus cereus
1ZWX_A       207 DMLKll-------nVSSPAnfngqmATWDPttnsmlk------------------------------------------- 236 Listeria ivanovii
XP_429344    525 DKLEqqhslfthykDPCRIgpg-edKPWAIgtlldpeglydeevftpdnlqkvlesee---------grkgylvyptskn 594 chicken
NP_001116222 547 DKLEqqhslfthykDPCRLgpg-edKPWALgtyldtsgiydeevsspeslqkvmenee---------grkeylvfptskn 616 zebrafish
O35049       518 DKLEqqhslftrykDPCRLgpg-eeKPWAIgtlldinglydedvctpdnlqkvlesee---------grreylafptsks 587 Norway rat
BAG12869     412 DRLEqshsvfdeytDPCRAaag-keKPWVIgtlleqptlydenmrtpdnlqrtlesed----------lrkdfisppval 480 zebrafish
NP_001089663 522 DKLEqqhslfthykDPCRLspg-eeKPWAIgtlldpeglydeevctpdnlqkvlenee---------grkeyivyptskn 591 African clawed ...
XP_002587512 353 EKTArehplmekyvDVCKDvpg-rdKPWTIgtelrqctfwessistpeklraslrsrraqarclldcdvtdanmdmvwsv 431 Florida lancelet
XP_002128155 446 DLNEqrcqflqqfiDPCIDeqsggqHSWVVgtelnqtrmhedrvktprglqrmlv---------------selercryva 510 Ciona intestinalis
XP_782298    444 DMTDwshplfliyhDPCRLkpg-ldKHWTVgtlmrsqrlhdqevstpenlqrvlensqkrs----tyvedvkvwegtegq 518 purple urchin
Feature 1                           #                                         ##       
2UYR_X       242 --------ynfpdspAEYLDYIIAskdhanpsyiENKVLQpkspqwtvtswfqkytyndySDHYPVEATI 303 Bacillus cereus
1ZWX_A       237 --------esypkaaPEYLDYIFVengharphswHNKVLHtkspqwsvkswfktytyqdfSDHYPVVGFT 298 Listeria ivanovii
XP_429344    595 hsssqkgrkaslkgnGRRIDYMLYteegl-ylewKVEVEEfsfit----------qlaglTDHLPVAMRL 653 chicken
NP_001116222 617 hcpsqkgrkiplkgnGRRIDYILYkeegl-hqdwKVDIEEfsfit----------qlaglTDHLSVAARL 675 zebrafish
O35049       588 pgagqkgrkdllkgnGRRIDYMLHaeegl-cpdwKAEVEEfsfit----------qlsglTDHLPVAMRL 646 Norway rat
BAG12869     481 dgvplvypeadqpwiGRRIDYLLYrek----sghRTEVEEltyvt----------qlaglTDHIPVGFRL 536 zebrafish
NP_001089663 592 hcpnqkgrkvplkgsGRRVDYMLYteegl-nmewKVDVEEysfit----------qlaglTDHVPVAFRL 650 African clawed frog
XP_002587512 432 pevaeeeaevpdiagRRRIDYVMYrsn-----ggRGDVSVekyslv--------tqlarlTDHIPVCLTF 488 Florida lancelet
XP_002128155 511 sttptknslqkpqdgKRKIDYILYeec----pniNTDIKDfkfft----------glatlTDHLPVGMVF 566 Ciona intestinalis
XP_782298    519 hpwstfdlrnyqgngKRRVDYVLCsn-------yNTHMMQla----------------tlTDHIPISMTL 565 purple urchin

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