U.S. flag

An official website of the United States government

Display Settings:

Format

Send to:

Choose Destination

Links from Protein

Accession: PRJNA242781 ID: 242781

Methanosarcina

Methanosarcina Genome sequencing and assembly

Methanogenic archaea are a genotypically and phenotypically diverse group that serve as key players in carbon cycling occurring in anaerobic environments. More...
AccessionPRJNA242781
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismMethanosarcina[Taxonomy ID: 2207]
Archaea; Euryarchaeota; Stenosarchaea group; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina
PublicationsYoungblut ND et al., "Genomic and phenotypic differentiation among Methanosarcina mazei populations from Columbia River sediment.", ISME J, 2015 Oct;9(10):2191-205
Grants
  • "Genomes to Life: Biological Systems Research on the Role of Microbial Communities in Carbon Cycling" (Grant ID DE-SC0005348, Department of Energy)
SubmissionRegistration date: 23-Apr-2015
University of Illinois at Urbana-Champaign
RelevanceEvolution
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)11461
WGS master63
SRA Experiments66
Protein Sequences209388
Publications
PubMed1
PMC1
Other datasets
BioSample66
Assembly63
Assembly details:
Assembly levelNumber of Assemblies
Scaffold Scaffold
Total
63
63
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_000979205.1ScaffoldJJQO00000000SAMN02708937
1.H.A.2.7
Methanosarcina mazei
GCA_000979195.1ScaffoldJJQM00000000SAMN02708936
1.H.A.2.3
Methanosarcina mazei
GCA_000979185.1ScaffoldJJQI00000000SAMN02708935
1.H.A.1A.4
Methanosarcina mazei
GCA_000979175.1ScaffoldJJQH00000000SAMN02708968
1.H.A.1A.3
Methanosarcina mazei
GCA_000979125.1ScaffoldJJQE00000000SAMN02708967
1.F.M.0.5
Methanosarcina mazei
GCA_000979105.1ScaffoldJJQA00000000SAMN02708932
1.F.A.1A.3
Methanosarcina mazei
GCA_000979375.1ScaffoldJJOT00000000SAMN02708943
2.F.T.0.2
Methanosarcina mazei
GCA_000979265.1ScaffoldJJQU00000000SAMN02708980
1.H.M.2.1
Methanosarcina mazei
GCA_000979255.1ScaffoldJJQS00000000SAMN02708938
1.H.M.1A.2
Methanosarcina mazei
GCA_000979345.1ScaffoldJJOS00000000SAMN02708981
2.F.A.2.4
Methanosarcina mazei
GCA_000979335.1ScaffoldJJOR00000000SAMN02708960
2.F.A.2.3
Methanosarcina mazei
GCA_000979275.1ScaffoldJJQV00000000SAMN02708939
1.H.M.2.2
Methanosarcina mazei
GCA_000979095.1ScaffoldJJPX00000000SAMN02708964
3.H.M.2.7
Methanosarcina mazei
GCA_000979115.1ScaffoldJJQD00000000SAMN02708956
1.F.A.2.8
Methanosarcina mazei
GCA_000979035.1ScaffoldJJPU00000000SAMN02708985
3.H.M.1B.1
Methanosarcina mazei
GCA_000979045.1ScaffoldJJPW00000000SAMN02708954
3.H.M.1B.5
Methanosarcina mazei
GCA_000979015.1ScaffoldJJPO00000000SAMN02708987
3.H.A.2.1
Methanosarcina mazei
GCA_000979025.1ScaffoldJJPR00000000SAMN02708951
3.H.A.2.6
Methanosarcina mazei
GCA_000978955.1ScaffoldJJOU00000000SAMN02708974
2.F.T.2.6
Methanosarcina mazei
GCA_000978945.1ScaffoldJJPB00000000SAMN02708944
3.F.A.1A.3
Methanosarcina mazei
GCA_000978965.1ScaffoldJJPI00000000SAMN02708961
3.F.T.1A.1
Methanosarcina mazei
GCA_000978935.1ScaffoldJJPF00000000SAMN02708945
3.F.A.2.5
Methanosarcina mazei
GCA_000980175.1ScaffoldJJRB00000000SAMN02708942
1.H.T.2.5
Methanosarcina mazei
GCA_000980155.1ScaffoldJJRA00000000SAMN02708941
1.H.T.2.3
Methanosarcina mazei
GCA_000980135.1ScaffoldJJQZ00000000SAMN02708973
1.H.T.2.1
Methanosarcina mazei
GCA_000980085.1ScaffoldJJQT00000000SAMN02708971
1.H.M.1A.3
Methanosarcina mazei
GCA_000980105.1ScaffoldJJQX00000000SAMN02708972
1.H.M.2.4
Methanosarcina mazei
GCA_000980075.1ScaffoldJJQW00000000SAMN02708940
1.H.M.2.3
Methanosarcina mazei
GCA_000980055.1ScaffoldJJQR00000000SAMN02708959
1.H.M.1A.1
Methanosarcina mazei
GCA_000980025.1ScaffoldJJQQ00000000SAMN02708970
1.H.M.0.1
Methanosarcina mazei
GCA_000979995.1ScaffoldJJQN00000000SAMN02708979
1.H.A.2.6
Methanosarcina mazei
GCA_000980005.1ScaffoldJJQP00000000SAMN02708958
1.H.A.2.8
Methanosarcina mazei
GCA_000979935.1ScaffoldJJQK00000000SAMN02708978
1.H.A.2.1
Methanosarcina mazei
GCA_000979925.1ScaffoldJJQJ00000000SAMN02708969
1.H.A.1A.6
Methanosarcina mazei
GCA_000979915.1ScaffoldJJQG00000000SAMN02708957
1.H.A.1A.1
Methanosarcina mazei
GCA_000979895.1ScaffoldJJQF00000000SAMN02708934
1.H.A.0.1
Methanosarcina mazei
GCA_000979855.1ScaffoldJJQC00000000SAMN02708966
1.F.A.1B.4
Methanosarcina mazei
GCA_000979845.1ScaffoldJJQB00000000SAMN02708933
1.F.A.1B.3
Methanosarcina mazei
GCA_000979825.1ScaffoldJJPZ00000000SAMN02708965
3.H.T.1A.2
Methanosarcina mazei
GCA_000979815.1ScaffoldJJPY00000000SAMN02708955
3.H.T.1A.1
Methanosarcina mazei
GCA_000979765.1ScaffoldJJPV00000000SAMN02708953
3.H.M.1B.2
Methanosarcina mazei
GCA_000979755.1ScaffoldJJPT00000000SAMN02708952
3.H.M.1A.1
Methanosarcina mazei
GCA_000979745.1ScaffoldJJPS00000000SAMN02708977
3.H.A.2.8
Methanosarcina mazei
GCA_000979735.1ScaffoldJJPQ00000000SAMN02708950
3.H.A.2.5
Methanosarcina mazei
GCA_000979675.1ScaffoldJJPN00000000SAMN02708962
3.H.A.1A.2
Methanosarcina mazei
GCA_000979685.1ScaffoldJJPP00000000SAMN02708963
3.H.A.2.4
Methanosarcina mazei
GCA_000979665.1ScaffoldJJPL00000000SAMN02708986
3.F.T.2.1
Methanosarcina mazei
GCA_000979655.1ScaffoldJJPM00000000SAMN02708984
3.H.A.1A.1
Methanosarcina mazei
GCA_000979575.1ScaffoldJJPG00000000SAMN02708946
3.F.A.2.6
Methanosarcina mazei
GCA_000979635.1ScaffoldJJPK00000000SAMN02708949
3.F.T.1A.4
Methanosarcina mazei
GCA_000979595.1ScaffoldJJPJ00000000SAMN02708948
3.F.T.1A.2
Methanosarcina mazei
GCA_000979585.1ScaffoldJJPH00000000SAMN02708947
3.F.A.2.7
Methanosarcina mazei
GCA_000979555.1ScaffoldJJPE00000000SAMN02708976
3.F.A.2.3
Methanosarcina mazei
GCA_000979495.1ScaffoldJJPA00000000SAMN02708982
3.F.A.1A.1
Methanosarcina mazei
GCA_000979515.1ScaffoldJJPD00000000SAMN02708975
3.F.A.2.12
Methanosarcina mazei
GCA_000979505.1ScaffoldJJPC00000000SAMN02708983
3.F.A.1B.1
Methanosarcina mazei
GCA_000979975.1ScaffoldJJQL00000000SAMN02708993
1.H.A.2.2
Methanosarcina sp. 1.H.A.2.2
GCA_000979295.1ScaffoldJJQY00000000SAMN02708994
1.H.T.1A.1
Methanosarcina sp. 1.H.T.1A.1
GCA_000979385.1ScaffoldJJOV00000000SAMN02708992
2.H.A.1B.4
Methanosarcina sp. 2.H.A.1B.4
GCA_000979415.1ScaffoldJJOW00000000SAMN02708988
2.H.T.1A.15
Methanosarcina sp. 2.H.T.1A.15
GCA_000979425.1ScaffoldJJOX00000000SAMN02708989
2.H.T.1A.3
Methanosarcina sp. 2.H.T.1A.3
GCA_000979455.1ScaffoldJJOY00000000SAMN02708991
2.H.T.1A.6
Methanosarcina sp. 2.H.T.1A.6
GCA_000979475.1ScaffoldJJOZ00000000SAMN02708990
2.H.T.1A.8
Methanosarcina sp. 2.H.T.1A.8
SRA Data Details
ParameterValue
Data volume, Gbases71
Data volume, Mbytes48174

Supplemental Content

Related information

LinkOut to external resources

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
You are here: NCBI
Support Center