Escherichia coli (ID 606486) - BioProject

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Accession: PRJDB8858 ID: 606486

Escherichia coli

Genome sequence analysis of antimicrobial-resistant bacteria

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8902 additional projects are related by organism.

The purpose of the study is to investigate the antimicrobial-resistant bacteria in food, livestock-, and human-feces samples using genetic analysis for clarifying the dissemination of resistant bacteria in a community.

Accession	PRJDB8858
Data Type	Genome sequencing
Scope	Multiisolate
Organism	Escherichia coli[Taxonomy ID: 562] Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
Publications (total 3) Less...	Hoang HTT et al., "Fusion plasmid carrying the colistin resistance gene mcr of Escherichia coli isolated from healthy residents.", J Glob Antimicrob Resist, 2022 Sep;30:152-154 More... Hoang HTT et al., "Fusion plasmid carrying the colistin resistance gene mcr of Escherichia coli isolated from healthy residents.", J Glob Antimicrob Resist, 2022 Sep;30:152-154 Kawahara R et al., "Comparative Genome Analysis of Livestock and Human Colistin-Resistant Escherichia coli Isolates from the Same Household.", Infect Drug Resist, 2021;14:841-847 Yamaguchi T et al., "High Prevalence of Colistin-Resistant Escherichia coli with Chromosomally Carried mcr-1 in Healthy Residents in Vietnam.", mSphere, 2020 Mar 4;5(2) Less...
Grants	17H01687, the Japan Society for the Promotion of Science KAKENHI
Submission	Registration date: 12-Feb-2020 Osaka Institute of Public Health

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (Genomic DNA)	43
SRA Experiments	2
Protein Sequences	63771
Publications
PubMed	3
PMC	2
Other datasets
BioSample	22
Assembly	14

Assembly details:

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Assembly level

Number of Assemblies

Complete genome

Total

14
14

Assembly	Chrs	BioSample	Strain	Taxonomy
GCA_020886575.2	4	SAMD00407183	2017.11.01CC	Escherichia coli
GCA_020886495.2	6	SAMD00407182	2017.09.02CC	Escherichia coli
GCA_020886435.2	5	SAMD00407181	2017.06.04CC	Escherichia coli
GCA_020886375.2	4	SAMD00407180	2017.04.03CC	Escherichia coli
GCA_030295075.1	2	SAMD00439260	LR-50	Escherichia coli
GCA_030295055.1	5	SAMD00439258	LR-06	Escherichia coli
GCA_011404895.1	2	SAMD00190249	2018-02-2CC	Escherichia coli
GCA_011404755.1	1	SAMD00190255	2018-11-3CC	Escherichia coli
GCA_011404595.1	1	SAMD00190253	2018-10-1CC	Escherichia coli
GCA_011404475.1	1	SAMD00190251	2018-06-4CC	Escherichia coli
GCA_011404355.1	1	SAMD00190246	2018-01-1CC	Escherichia coli
GCA_011404215.1	1	SAMD00190245	2017.01.04CC	Escherichia coli
GCA_011403355.1	1	SAMD00190256	2017.15.01CC	Escherichia coli
GCA_016592875.1	1	SAMD00233763	2018-18.25PC	Escherichia coli

SRA Data Details

Parameter	Value
Data volume, Gbases	3
Data volume, Mbytes	2049

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Escherichia coli

Genome sequence analysis of antimicrobial-resistant bacteria

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