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Taxonomy browser (Oryza brachyantha)

Oryza brachyantha

Taxonomy ID: 4533 (for references in articles please use NCBI:txid4533)
current name
Oryza brachyantha A.Chev. & Roehr., 1914
Genbank common name: malo sina
NCBI BLAST name: monocots
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
   Entrez records   
Database name Direct links
Nucleotide 105,615
Protein 31,033
Genome 1
Popset 183
GEO Datasets 31
PubMed Central 351
Gene 29,833
SRA Experiments 69
Identical Protein Groups 27,338
BioProject 13
BioSample 57
Assembly 4
Taxonomy 1

Comments and References:

GRIN (Aug 07, 2012)
Name accessed on 7 August 2012 in: USDA, ARS, National Genetic Resources Program. Germplasm Resources Information Network - (GRIN) [Online Database]. National Germplasm Resources Laboratory, Beltsville, Maryland.
TROPICOS (Aug 27, 2015)
Name accessed on 27 August 2015 in: Tropicos.org. Missouri Botanical Garden, 2008 - 4344 Shaw Boulevard, Saint Louis, Missouri 63110, U.S.A. on line at: http://www.tropicos.org/
GRIN (Oct 18, 2016)
Name accessed on 18 October 2016 in: USDA, ARS, National Genetic Resources Program. Germplasm Resources Information Network - (GRIN) [Online Database]. National Germplasm Resources Laboratory, Beltsville, Maryland.

Genome Information

Go to NCBI genomic BLAST page for Oryza brachyantha
Genome view: 12 chromosomes
Names 1 2 3 4 5 6 7 8 9 10 11 12

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
2 records from this provider organism-specific Genomes On Line Database
Oryza brachyantha taxonomy/phylogenetic Lifemap
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Oryza brachyantha (A.Chev. & Roehrich) herbarium/museum collections PlantaeDB, University of Bucharest
Oryza brachyantha taxonomy/phylogenetic Plants of the World Online
Oryza brachyantha taxonomy/phylogenetic The International Plant Names Index
Oryza brachyantha A. Chev. & Roehr. taxonomy/phylogenetic USDA-ARS GRIN Taxonomy
search W3TROPICOS taxonomy/phylogenetic Vascular Tropicos
WebScipio: Oryza brachyantha organism-specific WebScipio - eukaryotic gene identification
diArk: Oryza brachyantha organism-specific diArk - a resource for eukaryotic genome research
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

Organism modifiers

To hide organism modifiers click here
strain
101232 [10] IRGC 101232 [1 3 39] IRGC101232 [3 3] W0656 [1 6 2 1]
W1401 [1 20 5 1] W1407 [1 1] W1704 [1] W1711 [1 10 7 1]
cultivar
DNA-35 [7 7 7] DNA-36 [7 7 7] OR_W0654 [1 1] OR_W0656 [1]
OR_W1057 [1] OR_W1401 [1] OR_W1402 [1] OR_W1404 [2 2]
OR_W1405 [2 2] OR_W1407 [2 2] OR_W1703 [2 2] OR_W1705 [2 2]
OR_W1706 [1 1] OR_W1708 [1 1] OR_W1711 [1 1] OR_W1712 [1 1]
OR_W654 [1 1]
isolate
Adh1_bra_CMR1 [1 1] Adh1_bra_CMR2 [1 1] Adh1_bra_CMR3 [1 1] Adh1_bra_CMR4 [1 1]
Adh1_bra_GUI [1 1] Adh1_bra_MLI [1 1] Adh1_bra_NIG [1 1] Adh1_bra_SLE1 [1 1]
Adh1_bra_SLE2 [1 1] Adh1_bra_ZAM [1 1] BADH_bra_CMR1 [1 1 1] BADH_bra_CMR2 [1 1 1]
BADH_bra_CMR3 [1 1 1] BADH_bra_CMR4 [1 1 1] BADH_bra_GUI [1 1 1] BADH_bra_MLI [1 1 1]
BADH_bra_NIG [1 1 1] BADH_bra_SLE1 [1 1 1] BADH_bra_SLE2 [1 1 1] BADH_bra_ZAM [1 1 1]
CatB_bra_CMR1 [1 1 1] CatB_bra_CMR2 [1 1 1] CatB_bra_CMR3 [1 1 1] CatB_bra_CMR4 [1 1 1]
CatB_bra_GUI [1 1 1] CatB_bra_MLI [1 1 1] CatB_bra_NGR [1 1 1] CatB_bra_SLE1 [1 1 1]
CatB_bra_SLE2 [1 1 1] CatB_bra_ZAM [1 1 1] Cbp1_bra_CMR1 [1 1 1] Cbp1_bra_CMR2 [1 1 1]
Cbp1_bra_CMR3 [1 1 1] Cbp1_bra_CMR4 [1 1 1] Cbp1_bra_GUI [1 1 1] Cbp1_bra_MLI [1 1 1]
Cbp1_bra_NIG [1 1 1] Cbp1_bra_SLE1 [1 1 1] Cbp1_bra_SLE2 [1 1 1] Cbp1_bra_ZAM [1 1 1]
F2 [2] GBSSII_bra_CMR1 [1 1 1] GBSSII_bra_CMR2 [1 1 1] GBSSII_bra_CMR3 [1 1 1]
GBSSII_bra_CMR4 [1 1 1] GBSSII_bra_NIG [1 1 1] GBSSII_bra_SLE1 [1 1 1] GBSSII_bra_SLE2 [1 1 1]
GBSSII_bra_ZAM [1 1 1] GPA1_bra_CMR1 [1 1 1] GPA1_bra_CMR2 [1 1 1] GPA1_bra_CMR3 [1 1 1]
GPA1_bra_CMR4 [1 1] GPA1_bra_GUI [1 1] GPA1_bra_MLI [1 1] GPA1_bra_NIG [1 1 1]
GPA1_bra_SLE1 [1 1 1] GPA1_bra_SLE2 [1 1 1] GPA1_bra_ZAM [1 1 1] Lhs1_bra_CMR1 [1 1 1]
Lhs1_bra_CMR2 [1 1 1] Lhs1_bra_CMR3 [1 1 1] Lhs1_bra_CMR4 [1 1 1] Lhs1_bra_GUI [1 1 1]
Lhs1_bra_MLI [1 1 1] Lhs1_bra_NIG [1 1 1] Lhs1_bra_SLE1 [1 1 1] Lhs1_bra_SLE2 [1 1 1]
Lhs1_bra_ZAM [1 1 1] NP109_bra_CMR1 [1 1 1] NP109_bra_CMR2 [1 1 1] NP109_bra_CMR3 [1 1 1]
NP109_bra_CMR4 [1 1 1] NP109_bra_GUI [1 1 1] NP109_bra_MLI [1 1 1] NP109_bra_NIG [1 1 1]
NP109_bra_SLE1 [1 1 1] NP109_bra_SLE2 [1 1 1] NP109_bra_ZAM [1 1 1] NP23_bra_CMR1 [1 1 1]
NP23_bra_CMR2 [1 1 1] NP23_bra_CMR3 [1 1 1] NP23_bra_CMR4 [1 1 1] NP23_bra_GUI [1 1 1]
NP23_bra_MLI [1 1 1] NP23_bra_NGR [1 1 1] NP23_bra_SLE1 [1 1 1] NP23_bra_SLE2 [1 1 1]
NP23_bra_ZAM [1 1 1] NP29_bra_CMR1 [1 1 1] NP29_bra_CMR2 [1 1 1] NP29_bra_CMR3 [1 1 1]
NP29_bra_CMR4 [1 1 1] NP29_bra_GUI [1 1 1] NP29_bra_MLI [1 1 1] NP29_bra_NGR [1 1 1]
NP29_bra_SLE1 [1 1 1] NP29_bra_SLE2 [1 1 1] NP29_bra_ZAM [1 1 1] NP70_bra_CMR1 [1 1 1]
NP70_bra_CMR2 [1 1 1] NP70_bra_CMR3 [1 1 1] NP70_bra_CMR4 [1 1 1] NP70_bra_GUI [1 1 1]
NP70_bra_MLI [1 1 1] NP70_bra_NGR [1 1 1] NP70_bra_SLE1 [1 1 1] NP70_bra_SLE2 [1 1 1]
NP70_bra_ZAM [1 1 1] NP72_bra_CMR1 [1 1 1] NP72_bra_CMR2 [1 1 1] NP72_bra_CMR3 [1 1 1]
NP72_bra_CMR4 [1 1 1] NP72_bra_GUI [1 1 1] NP72_bra_MLI [1 1 1] NP72_bra_NGR [1 1 1]
NP72_bra_SLE1 [1 1 1] NP72_bra_ZAM [1 1 1] NP81_bra_CMR1 [1 1 1] NP81_bra_CMR2 [1 1 1]
NP81_bra_CMR3 [1 1 1] NP81_bra_CMR4 [1 1 1] NP81_bra_GUI [1 1 1] NP81_bra_MLI [1 1 1]
NP81_bra_NGR [1 1 1] NP81_bra_SLE1 [1 1 1] NP81_bra_SLE2 [1 1 1] NP81_bra_ZAM [1 1 1]
NP89_bra_CMR1 [1 1 1] NP89_bra_CMR2 [1 1 1] NP89_bra_CMR3 [1 1 1] NP89_bra_CMR4 [1 1 1]
NP89_bra_GUI [1 1 1] NP89_bra_MLI [1 1 1] NP89_bra_NGR [1 1 1] NP89_bra_SLE1 [1 1 1]
NP89_bra_SLE2 [1 1 1] NP89_bra_ZAM [1 1 1] NP8_bra_CMR1 [1 1 1] NP8_bra_CMR2 [1 1 1]
NP8_bra_CMR3 [1 1 1] NP8_bra_CMR4 [1 1 1] NP8_bra_GUI [1 1 1] NP8_bra_MLI [1 1 1]
NP8_bra_NGR [1 1 1] NP8_bra_SLE1 [1 1 1] NP8_bra_SLE2 [1 1 1] NP8_bra_ZAM [1 1 1]
R23_bra_CMR1 [1 1] R23_bra_CMR2 [1 1] R23_bra_CMR3 [1 1] R23_bra_CMR4 [1 1]
R23_bra_GUI [1 1] R23_bra_MLI [1 1] R23_bra_NGR [1 1] R23_bra_SLE1 [1 1]
R23_bra_ZAM [1 1] RWG-455 [7 7 7] RWG-456 [7 7 7] Rict_bra_CMR1 [1 1 1]
Rict_bra_CMR2 [1 1 1] Rict_bra_CMR3 [1 1 1] Rict_bra_CMR4 [1 1 1] Rict_bra_GUI [1 1 1]
Rict_bra_MLI [1 1 1] Rict_bra_NGR [1 1 1] Rict_bra_SLE1 [1 1 1] Rict_bra_SLE2 [1 1 1]
Rict_bra_ZAM [1 1 1] SSII1_bra_CMR1 [1 1 1] SSII1_bra_CMR2 [1 1 1] SSII1_bra_CMR3 [1 1 1]
SSII1_bra_CMR4 [1 1 1] SSII1_bra_GUI [1 1 1] SSII1_bra_MLI [1 1 1] SSII1_bra_NIG [1 1 1]
SSII1_bra_SLE1 [1 1 1] SSII1_bra_SLE2 [1 1 1] SSII1_bra_ZAM [1 1 1] TFIIAr-1_bra_CMR1 [1 1]
TFIIAr-1_bra_CMR2 [1 1] TFIIAr-1_bra_CMR3 [1 1] TFIIAr-1_bra_CMR4 [1 1] TFIIAr-1_bra_GUI [1 1]
TFIIAr-1_bra_MLI [1 1] TFIIAr-1_bra_NIG [1 1] TFIIAr-1_bra_SLE1 [1 1] TFIIAr-1_bra_SLE2 [1 1]
TFIIAr-1_bra_ZAM [1 1] W0654 [2 2] W0656 [1] W1057 [1]
W1401 [1] W1402 [1] W1404 [2 2] W1405 [2 2]
W1407 [2 2] W1703 [2 2] W1705 [2 2] W1706 [1 1]
W1708 [1 1] W1711 [1 1] W1712 [1 1] Waxy_bra_CMR1 [1 1 1]
Waxy_bra_CMR2 [1 1 1] Waxy_bra_CMR3 [1 1 1] Waxy_bra_CMR4 [1 1 1] Waxy_bra_GUI [1 1 1]
Waxy_bra_MLI [1 1 1] Waxy_bra_NIG [1 1 1] Waxy_bra_SLE1 [1 1 1] Waxy_bra_SLE2 [1 1 1]
Waxy_bra_ZAM [1 1 1]
specimen-voucher
105151 [2 3 2] 2422 [1 2] BOP022653 [1] BOP022654 [2 2]
IRGC 105151 [3 3 3]
bio-material
IRGC:100115 [19 19 15] IRGC:101232 [2 34299 20 30011] IRGC:104155 [20 20 17] IRGC:104157 [20 20 17]
IRGC:104979 [20 20 17] IRGC:105151 [134 134 37] IRGC:105171 [20 20 17] IRGC:105172 [20 20 16]
IRGC:105570 [22 19 18] IRGC:27417 [1 1] IRGC:81950 [20 20 17] IRGC:998813 [3 3 1]
IRGC:seed accession 105151 [9 9 9] IRGC:seed accession 105171 [1 1 1] IRGC:seed accession 27417 [3 3 2] IRGC:seed accession 81950 [1 1 1]
IRGC:seed accession 91950 [1 1 1] IRGC:seed accession 998813 [4 4 2]

Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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