|
Name |
Accession |
Description |
Interval |
E-value |
| CAP_GLY |
pfam01302 |
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ... |
213-277 |
1.02e-34 |
|
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 460154 [Multi-domain] Cd Length: 65 Bit Score: 126.75 E-value: 1.02e-34
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907165175 213 VGDRVLVGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKV 277
Cdd:pfam01302 1 VGDRVEVPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
|
|
| CAP_GLY |
pfam01302 |
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ... |
60-124 |
5.04e-31 |
|
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 460154 [Multi-domain] Cd Length: 65 Bit Score: 116.35 E-value: 5.04e-31
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907165175 60 VGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKL 124
Cdd:pfam01302 1 VGDRVEVPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
|
|
| CAP_GLY |
smart01052 |
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ... |
213-278 |
3.13e-28 |
|
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 214997 [Multi-domain] Cd Length: 68 Bit Score: 108.44 E-value: 3.13e-28
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907165175 213 VGDRVLVGGT-KAGVVRFLGETDFAKGEWCGVELDEPL-GKNDGAVAGTRYFQCQPKYGLFAPVHKVT 278
Cdd:smart01052 1 VGDRVEVGGGgRRGTVRYVGPTPFAPGVWVGVELDEPLrGKNDGSVKGVRYFECPPKHGIFVRPSKVE 68
|
|
| CAP_GLY |
smart01052 |
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ... |
60-125 |
2.13e-27 |
|
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 214997 [Multi-domain] Cd Length: 68 Bit Score: 106.13 E-value: 2.13e-27
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907165175 60 VGERVWVNGN-KPGFIQFLGETQFAPGQWAGIVLDEP-IGKNDGSVAGVRYFQCEPLKGIFTRPSKLT 125
Cdd:smart01052 1 VGDRVEVGGGgRRGTVRYVGPTPFAPGVWVGVELDEPlRGKNDGSVKGVRYFECPPKHGIFVRPSKVE 68
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
478-1214 |
5.30e-21 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 100.13 E-value: 5.30e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 478 ELEKDL------ALRAQEVAELRRRLEsskppgDVDMSLSLLqEISALQEKLEAIhtdhQGEMTSLKEhfgaREEAFQKE 551
Cdd:TIGR02168 197 ELERQLkslerqAEKAERYKELKAELR------ELELALLVL-RLEELREELEEL----QEELKEAEE----ELEELTAE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 552 IKALHTATEKLSKENESLRSKLDHANKENSDVIALwKSKLETAIASHQQAMEELKVSFSKGigtdSAEFAELKTQIERLR 631
Cdd:TIGR02168 262 LQELEEKLEELRLEVSELEEEIEELQKELYALANE-ISRLEQQKQILRERLANLERQLEEL----EAQLEELESKLDELA 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 632 LDY---QHEIESLQSKQDSERSAHAKEMETMQAkLMKIIKEKEDSLEAVKARLDSAEDQ------HLVEMEDTLNKLQEA 702
Cdd:TIGR02168 337 EELaelEEKLEELKEELESLEAELEELEAELEE-LESRLEELEEQLETLRSKVAQLELQiaslnnEIERLEARLERLEDR 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 703 EIKANSITKELQEK--ELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLS 780
Cdd:TIGR02168 416 RERLQQEIEELLKKleEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLE 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 781 SELEKLRENLTDMEAKFKEKDDRED------QLVKAKEK----LENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQ 850
Cdd:TIGR02168 496 RLQENLEGFSEGVKALLKNQSGLSGilgvlsELISVDEGyeaaIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTF 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 851 LKLTKANENAsfLQKSIGEVtLKAEQSQQQAARKHEEEKKELEEKLLE--LEKKMETSYNQCQDLKAKYE---------- 918
Cdd:TIGR02168 576 LPLDSIKGTE--IQGNDREI-LKNIEGFLGVAKDLVKFDPKLRKALSYllGGVLVVDDLDNALELAKKLRpgyrivtldg 652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 919 ----------KASSETKTKheeiLQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKaaQTAEDAMQIMEQMTK 988
Cdd:TIGR02168 653 dlvrpggvitGGSAKTNSS----ILERRREIEELEEKIEELEEKIAELEKALAELRKELEELE--EELEQLRKELEELSR 726
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 989 EKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENV 1068
Cdd:TIGR02168 727 QISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALD 806
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1069 KLAEELGRTRDEVtsHQKLEEERSVLNNqlLEMKKRESEfrkDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLR 1148
Cdd:TIGR02168 807 ELRAELTLLNEEA--ANLRERLESLERR--IAATERRLE---DLEEQIEELSEDIESLAAEIEELEELIEELESELEALL 879
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907165175 1149 GENATAKSLhsvVQTLESDKVKLELKVKNLELQLKENKRQLSSSsgnTDAQAEEDERAQESQQMID 1214
Cdd:TIGR02168 880 NERASLEEA---LALLRSELEELSEELRELESKRSELRRELEEL---REKLAQLELRLEGLEVRID 939
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
352-1052 |
6.03e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 87.03 E-value: 6.03e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 352 LQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQelalardghdqHVLELEAKMDQLRTMVEAADREKVELLNQLE 431
Cdd:TIGR02168 335 LAEELAELEEKLEELKEELESLEAELEELEAELEELES-----------RLEELEEQLETLRSKVAQLELQIASLNNEIE 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 432 EEKRKVEDLQFRVEEESITKGDLEQKSPISEDPENVATVSEKSR-IMELEKDLALRAQEVAELRRRLESSKPpgDVDMSL 510
Cdd:TIGR02168 404 RLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEeLEELQEELERLEEALEELREELEEAEQ--ALDAAE 481
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 511 SLLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREE--AFQKEIKALHTATEKLSKENES-LRSKLDH-----ANKENSD 582
Cdd:TIGR02168 482 RELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGlsGILGVLSELISVDEGYEAAIEAaLGGRLQAvvvenLNAAKKA 561
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 583 VIALWKSK--------LETAIASHQQAMEELKVSFSKGIGTDSAEFAELKTQIERL---RLDYQHEIESLQSKQDSERSA 651
Cdd:TIGR02168 562 IAFLKQNElgrvtflpLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKAlsyLLGGVLVVDDLDNALELAKKL 641
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 652 HAKEMetmqaklmkIIKEKEDSLEAVKARLDSAEDQHLV------EMEDTLNKLQEAEIKANSITKELQEKELVLTGLQD 725
Cdd:TIGR02168 642 RPGYR---------IVTLDGDLVRPGGVITGGSAKTNSSilerrrEIEELEEKIEELEEKIAELEKALAELRKELEELEE 712
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 726 SLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKfkekddred 805
Cdd:TIGR02168 713 ELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAE--------- 783
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 806 qlvkaKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARkh 885
Cdd:TIGR02168 784 -----IEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIES-- 856
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 886 eeeKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSEtktkHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKT 965
Cdd:TIGR02168 857 ---LAAEIEELEELIEELESELEALLNERASLEEALAL----LRSELEELSEELRELESKRSELRRELEELREKLAQLEL 929
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 966 QADKAKA------AQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKM 1039
Cdd:TIGR02168 930 RLEGLEVridnlqERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQK 1009
|
730
....*....|...
gi 1907165175 1040 EEFKKEIETLKQA 1052
Cdd:TIGR02168 1010 EDLTEAKETLEEA 1022
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
344-1106 |
1.73e-16 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 85.50 E-value: 1.73e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 344 RKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQeLALARDGHDQH--VLELEAKMDQLRTMVEAADR 421
Cdd:TIGR02169 244 RQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQ-LRVKEKIGELEaeIASLERSIAEKERELEDAEE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 422 EKVELLNQLEEEKRKVEDLQFRVEEESItkgdleQKSPISEDPENVATVSEK--SRIMELEKDLALRAQEVAELRRRLES 499
Cdd:TIGR02169 323 RLAKLEAEIDKLLAEIEELEREIEEERK------RRDKLTEEYAELKEELEDlrAELEEVDKEFAETRDELKDYREKLEK 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 500 SKPPGDvdmslSLLQEISALQEKLEAIHT---DHQGEMTSLKE---HFGAREEAFQKEIKA----LHTATEKLSKENESL 569
Cdd:TIGR02169 397 LKREIN-----ELKRELDRLQEELQRLSEelaDLNAAIAGIEAkinELEEEKEDKALEIKKqewkLEQLAADLSKYEQEL 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 570 ---RSKLDHANKENSDVialwKSKLETAIASHQQAMEELKVSFS--KGIGTDSAEFAELKTQIERLRLDYQHEIESLQSK 644
Cdd:TIGR02169 472 ydlKEEYDRVEKELSKL----QRELAEAEAQARASEERVRGGRAveEVLKASIQGVHGTVAQLGSVGERYATAIEVAAGN 547
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 645 -------QDSERSAHA----KEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQ--HLVEME------------DTL--N 697
Cdd:TIGR02169 548 rlnnvvvEDDAVAKEAiellKRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFavDLVEFDpkyepafkyvfgDTLvvE 627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 698 KLQEA-----EIKANSITKELQEKELVLTG--------------LQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSA 758
Cdd:TIGR02169 628 DIEAArrlmgKYRMVTLEGELFEKSGAMTGgsraprggilfsrsEPAELQRLRERLEGLKRELSSLQSELRRIENRLDEL 707
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 759 QTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDdredqlvkakEKLENDIAEimkmsgdnssqLTKMNDE 838
Cdd:TIGR02169 708 SQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLE----------QEIENVKSE-----------LKELEAR 766
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 839 LRLKERSVEELQLKLT--KANENASFLQKSIGEVT-LKAEQSQQQAARKH-EEEKKELEEKLLELEKKMETSYNQCQDLK 914
Cdd:TIGR02169 767 IEELEEDLHKLEEALNdlEARLSHSRIPEIQAELSkLEEEVSRIEARLREiEQKLNRLTLEKEYLEKEIQELQEQRIDLK 846
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 915 AKyekassetKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAqtaedamqiMEQMTKEKTETL 994
Cdd:TIGR02169 847 EQ--------IKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQ---------LRELERKIEELE 909
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 995 ASLEDTKQTNARLQNELDTLKENnLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAaaqksqqLSALQEENVK----L 1070
Cdd:TIGR02169 910 AQIEKKRKRLSELKAKLEALEEE-LSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEE-------IRALEPVNMLaiqeY 981
|
810 820 830
....*....|....*....|....*....|....*...
gi 1907165175 1071 AEELGRTRDEVTSHQKLEEERSVLNNQL--LEMKKRES 1106
Cdd:TIGR02169 982 EEVLKRLDELKEKRAKLEEERKAILERIeeYEKKKREV 1019
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
356-1123 |
5.90e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 83.57 E-value: 5.90e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 356 LKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGHdqhvLELEAKMDQLRTMVEAADREKVELLNQLEEEKR 435
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEV----SELEEEIEELQKELYALANEISRLEQQKQILRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 436 KVEDLQFRVEEESITKGDLEQKSpiSEDPENVATVSEKsrIMELEKDLALRAQEVAELRRRLESSKppgdvdmslSLLQE 515
Cdd:TIGR02168 310 RLANLERQLEELEAQLEELESKL--DELAEELAELEEK--LEELKEELESLEAELEELEAELEELE---------SRLEE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 516 ISALQEKLEAIHTDHQGEMTSLKEHFGAREEafqkEIKALHTATEKLSKENESLRSKLDHANKEnsdvialwksKLETAI 595
Cdd:TIGR02168 377 LEEQLETLRSKVAQLELQIASLNNEIERLEA----RLERLEDRRERLQQEIEELLKKLEEAELK----------ELQAEL 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 596 ASHQQAMEELKVSFSKGIgTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERS----------------AHAKEMETM 659
Cdd:TIGR02168 443 EELEEELEELQEELERLE-EALEELREELEEAEQALDAAERELAQLQARLDSLERlqenlegfsegvkallKNQSGLSGI 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 660 QAKLMKIIKEKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAEIKANSITKELqekeLVLTGLQDSLNQVN--QVKETL 737
Cdd:TIGR02168 522 LGVLSELISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTF----LPLDSIKGTEIQGNdrEILKNI 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 738 EKELQTLKE--KFASTSEEAVS---AQTRMQDTV----NKLHQKEEQFNVLSSELEKLR--------ENLTDMEAKFKEK 800
Cdd:TIGR02168 598 EGFLGVAKDlvKFDPKLRKALSyllGGVLVVDDLdnalELAKKLRPGYRIVTLDGDLVRpggvitggSAKTNSSILERRR 677
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 801 DDREdqLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQ 880
Cdd:TIGR02168 678 EIEE--LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKE 755
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 881 AARKHEEEKKELEEKLLELEKKMETSYNQcQDLKAKYEKASSETKTKhEEILQNLQKMLADTEDKLKAAQEANRDLMQDM 960
Cdd:TIGR02168 756 LTELEAEIEELEERLEEAEEELAEAEAEI-EELEAQIEQLKEELKAL-REALDELRAELTLLNEEAANLRERLESLERRI 833
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 961 EELKTQADKAkaAQTAEDAMQIMEQMTKEktetlasLEDTKQTNARLQNELDTLKennlktvEELNKSKELLSVENQKME 1040
Cdd:TIGR02168 834 AATERRLEDL--EEQIEELSEDIESLAAE-------IEELEELIEELESELEALL-------NERASLEEALALLRSELE 897
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1041 EFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQ-KLEEERSVLNNQLLEMKKRESEFRKDADEEKASL 1119
Cdd:TIGR02168 898 ELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQeRLSEEYSLTLEEAEALENKIEDDEEEARRRLKRL 977
|
....
gi 1907165175 1120 QKSI 1123
Cdd:TIGR02168 978 ENKI 981
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
544-1230 |
1.37e-15 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 82.42 E-value: 1.37e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 544 REEAFQKEIKALHTATEKLSKENEslrskldhaNKENSDVIALWKSKLE-TAIASHQQAMEELKVSFSKGIGTDSAEFAE 622
Cdd:TIGR02169 185 NIERLDLIIDEKRQQLERLRRERE---------KAERYQALLKEKREYEgYELLKEKEALERQKEAIERQLASLEEELEK 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 623 LKTQIERLRLDYqHEIESLqskqdseRSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEA 702
Cdd:TIGR02169 256 LTEEISELEKRL-EEIEQL-------LEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKL 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 703 EI-------KANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLH----- 770
Cdd:TIGR02169 328 EAeidkllaEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINelkre 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 771 --QKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEE 848
Cdd:TIGR02169 408 ldRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSK 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 849 LQLKLTKANENAS--------------FLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLk 914
Cdd:TIGR02169 488 LQRELAEAEAQARaseervrggraveeVLKASIQGVHGTVAQLGSVGERYATAIEVAAGNRLNNVVVEDDAVAKEAIEL- 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 915 AKYEKASSET-----KTKHEEILQNLQKM---------LADTEDKLKAA-------------QEANRDLM---------- 957
Cdd:TIGR02169 567 LKRRKAGRATflplnKMRDERRDLSILSEdgvigfavdLVEFDPKYEPAfkyvfgdtlvvedIEAARRLMgkyrmvtleg 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 958 ---------------QDMEELKTQADKAKAAQTAED----------AMQIMEQMTKEKTETLASLEDTKQTNARLQNELD 1012
Cdd:TIGR02169 647 elfeksgamtggsraPRGGILFSRSEPAELQRLRERleglkrelssLQSELRRIENRLDELSQELSDASRKIGEIEKEIE 726
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1013 TLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTR-DEVTSH-QKLEEE 1090
Cdd:TIGR02169 727 QLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRiPEIQAElSKLEEE 806
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1091 RSVLNNQLLEMKKRES-----------------EFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGENAT 1153
Cdd:TIGR02169 807 VSRIEARLREIEQKLNrltlekeylekeiqelqEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGD 886
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1154 AKS----LHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERAQESQQMIDFLNSVIVDLQRKNQD 1229
Cdd:TIGR02169 887 LKKerdeLEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEE 966
|
.
gi 1907165175 1230 L 1230
Cdd:TIGR02169 967 I 967
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
657-1247 |
2.27e-15 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 81.65 E-value: 2.27e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 657 ETMQAKLMKIIKEKEDSLEAVKARLDSAEDQHlvemedtlNKLQEAEIKANSITKELQEKELVLTGLQDSLNQVNQVKET 736
Cdd:PRK03918 161 ENAYKNLGEVIKEIKRRIERLEKFIKRTENIE--------ELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKE 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 737 LEKelqtLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEaKFKEKDDREDQLVKAKEKLEN 816
Cdd:PRK03918 233 LEE----LKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK-ELKEKAEEYIKLSEFYEEYLD 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 817 DIAEIMKMSGDNSSQLT---KMNDELRLKERSVEELQLKLTKANENASFLQKSIGEV-TLKAEQSQQQAARKheeekkel 892
Cdd:PRK03918 308 ELREIEKRLSRLEEEINgieERIKELEEKEERLEELKKKLKELEKRLEELEERHELYeEAKAKKEELERLKK-------- 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 893 eekllelekkmETSYNQCQDLKAKYEKASSEtKTKHEEILQNLQKMLADTEDKLKaaqeanrDLMQDMEELKTQADKA-- 970
Cdd:PRK03918 380 -----------RLTGLTPEKLEKELEELEKA-KEEIEEEISKITARIGELKKEIK-------ELKKAIEELKKAKGKCpv 440
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 971 -KAAQTAEDAMQIMEQMT-------KEKTETLASLEDTKQTNARLQNELDTLKE--NNLKTVEELNKSKELLSVEN-QKM 1039
Cdd:PRK03918 441 cGRELTEEHRKELLEEYTaelkrieKELKEIEEKERKLRKELRELEKVLKKESEliKLKELAEQLKELEEKLKKYNlEEL 520
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1040 EEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLL--------EMKKRESEFR-- 1109
Cdd:PRK03918 521 EKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEelgfesveELEERLKELEpf 600
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1110 -------KDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGENATAKSLHSV--VQTLESDKVKLELKVKNLEL 1180
Cdd:PRK03918 601 yneylelKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEeeYEELREEYLELSRELAGLRA 680
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907165175 1181 QLKENKRQLSSSSGNTDAQAEEDERAQESQQMIDFLNSVIVDLQRKNQDLKMKVEMMSEAALNGNGE 1247
Cdd:PRK03918 681 ELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEELREKVKKYKALLKERALSKVGE 747
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
404-1185 |
1.23e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 79.33 E-value: 1.23e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 404 ELEAKMDQLRTMVEAADREKvELLNQLEEEKRKVEDLQFRVEEESITKGDLEQKSPISEDPENVATVSEK-SRIMELEKD 482
Cdd:TIGR02168 197 ELERQLKSLERQAEKAERYK-ELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELeEKLEELRLE 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 483 LALRAQEVAELRRRLesskppgdvdmsLSLLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEIKALhTATEKL 562
Cdd:TIGR02168 276 VSELEEEIEELQKEL------------YALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELA-EELAEL 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 563 SKENESLRSKLDHANKENSDVIALWKSkLETAIASHQQAMEELKvsfskgigtdsAEFAELKTQIERLRLDYQH---EIE 639
Cdd:TIGR02168 343 EEKLEELKEELESLEAELEELEAELEE-LESRLEELEEQLETLR-----------SKVAQLELQIASLNNEIERleaRLE 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 640 SLQS---KQDSERSAHAKEMETMQaklmkiikekedsLEAVKARLDsAEDQHLVEMEDTLNKLQEAEIkanSITKELQEK 716
Cdd:TIGR02168 411 RLEDrreRLQQEIEELLKKLEEAE-------------LKELQAELE-ELEEELEELQEELERLEEALE---ELREELEEA 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 717 ELVLTGLQDSLNQVNQVKETLEKeLQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEK-LRENLTDMEA 795
Cdd:TIGR02168 474 EQALDAAERELAQLQARLDSLER-LQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAaLGGRLQAVVV 552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 796 KFKEKDDREDQLVKAKEK-----LENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEEL------------QLKLTKANE 858
Cdd:TIGR02168 553 ENLNAAKKAIAFLKQNELgrvtfLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDpklrkalsyllgGVLVVDDLD 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 859 NASFLQKSIGE----VTLKAEQ-----SQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSEtktkhe 929
Cdd:TIGR02168 633 NALELAKKLRPgyriVTLDGDLvrpggVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKE------ 706
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 930 eiLQNLQKMLadtEDKLKAAQEANRDLMQdmeelkTQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQN 1009
Cdd:TIGR02168 707 --LEELEEEL---EQLRKELEELSRQISA------LRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEE 775
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1010 ELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEvtsHQKLEE 1089
Cdd:TIGR02168 776 ELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQ---IEELSE 852
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1090 ERSVLNNQLLEMKKRESEFRKDAD---EEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGE-NATAKSLHSVVQTLE 1165
Cdd:TIGR02168 853 DIESLAAEIEELEELIEELESELEallNERASLEEALALLRSELEELSEELRELESKRSELRRElEELREKLAQLELRLE 932
|
810 820
....*....|....*....|
gi 1907165175 1166 sdkvKLELKVKNLELQLKEN 1185
Cdd:TIGR02168 933 ----GLEVRIDNLQERLSEE 948
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
674-1242 |
1.76e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 78.83 E-value: 1.76e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 674 LEAVKARLDSAEDqHLVEMEDTLNKLQ-EAEI--KANSITKELQEKELVLTGLQDslnqvnqvkETLEKELQTLKEKFAS 750
Cdd:COG1196 181 LEATEENLERLED-ILGELERQLEPLErQAEKaeRYRELKEELKELEAELLLLKL---------RELEAELEELEAELEE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 751 TSEEAVSAQTRMQDtvnklhqkeeqfnvLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSS 830
Cdd:COG1196 251 LEAELEELEAELAE--------------LEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEE 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 831 QLTKMNDELRLKERSVEELQLKLTKANEnasflqksigevTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQC 910
Cdd:COG1196 317 RLEELEEELAELEEELEELEEELEELEE------------ELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEEL 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 911 QDLKAKYEKASSETKTKheeiLQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQimEQMTKEK 990
Cdd:COG1196 385 AEELLEALRAAAELAAQ----LEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEE--AELEEEE 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 991 TETLASLEDTKQTNARLQNELDTLKEnnlKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKL 1070
Cdd:COG1196 459 EALLELLAELLEEAALLEAALAELLE---ELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAA 535
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1071 AEELGRTRDEVTSHQKLEEERSVLNNQLLEMKK----RESEFRKDADEEKASLQKSISLTSALL------TEKDAELEKL 1140
Cdd:COG1196 536 YEAALEAALAAALQNIVVEDDEVAAAAIEYLKAakagRATFLPLDKIRARAALAAALARGAIGAavdlvaSDLREADARY 615
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1141 RNEVTVLRGENATAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERAQESQQMIDFLNSVI 1220
Cdd:COG1196 616 YVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELEL 695
|
570 580
....*....|....*....|..
gi 1907165175 1221 VDLQRKNQDLKMKVEMMSEAAL 1242
Cdd:COG1196 696 EEALLAEEEEERELAEAEEERL 717
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
340-823 |
3.80e-14 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 77.80 E-value: 3.80e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 340 SRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELaLARDGHDQHVLELEAKMDQLRTMVEAA 419
Cdd:PRK03918 179 ERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEV-KELEELKEEIEELEKELESLEGSKRKL 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 420 DREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEQKSPISEDPENVatvseKSRIMELEKDLALRAQEVAELRRRLEs 499
Cdd:PRK03918 258 EEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEY-----LDELREIEKRLSRLEEEINGIEERIK- 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 500 sKPPGDVDMSLSLLQEISALQEKLEAIHTDHQ---------GEMTSLKEHFGARE-EAFQKEIKALHTATEKLSKENESL 569
Cdd:PRK03918 332 -ELEEKEERLEELKKKLKELEKRLEELEERHElyeeakakkEELERLKKRLTGLTpEKLEKELEELEKAKEEIEEEISKI 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 570 RSKLDHANKENSD----VIALWKSKLETAIASH---QQAMEELKVSFSKGIGTDSAEFAELKTQIERLRLDYQhEIESLQ 642
Cdd:PRK03918 411 TARIGELKKEIKElkkaIEELKKAKGKCPVCGReltEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELR-ELEKVL 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 643 SKQDSERSAH--AKEMETMQAKLMKI----IKEKEDSLEAVKARLDSAEDQhLVEMEDTLNKLQEAEIKANSITKELQEK 716
Cdd:PRK03918 490 KKESELIKLKelAEQLKELEEKLKKYnleeLEKKAEEYEKLKEKLIKLKGE-IKSLKKELEKLEELKKKLAELEKKLDEL 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 717 ELVLTGLQDSLNQ-----VNQVKETL----------------EKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQK--- 772
Cdd:PRK03918 569 EEELAELLKELEElgfesVEELEERLkelepfyneylelkdaEKELEREEKELKKLEEELDKAFEELAETEKRLEELrke 648
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 773 ---------EEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMK 823
Cdd:PRK03918 649 leelekkysEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREK 708
|
|
| NIP100 |
COG5244 |
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ... |
211-271 |
1.12e-13 |
|
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 227569 [Multi-domain] Cd Length: 669 Bit Score: 75.88 E-value: 1.12e-13
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907165175 211 LKVGDRVLVGGTKaGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLF 271
Cdd:COG5244 4 LSVNDRVLLGDKF-GTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIF 63
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
621-1143 |
1.18e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 76.13 E-value: 1.18e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 621 AELKTQIERLR------LDYQhEI-ESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQH----- 688
Cdd:COG1196 196 GELERQLEPLErqaekaERYR-ELkEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELeelrl 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 689 -LVEMEDTLNKLQEAEikaNSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVN 767
Cdd:COG1196 275 eLEELELELEEAQAEE---YELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEE 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 768 KLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVE 847
Cdd:COG1196 352 ELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALA 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 848 ELQLKLTKANENASFLQKSIGEVTLKAEQ--SQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETK 925
Cdd:COG1196 432 ELEEEEEEEEEALEEAAEEEAELEEEEEAllELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVK 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 926 TKHEEILQNLQ----KMLADTEDKLKAAQEA------NRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTETLA 995
Cdd:COG1196 512 AALLLAGLRGLagavAVLIGVEAAYEAALEAalaaalQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAA 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 996 SL------------EDTKQTNARLQNELDTLKENNLKT------VEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKS 1057
Cdd:COG1196 592 LArgaigaavdlvaSDLREADARYYVLGDTLLGRTLVAarleaaLRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELL 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1058 QQLSALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKRESEfRKDADEEKASLQKSISLTSALLTEKD--- 1134
Cdd:COG1196 672 AALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEEL-EEEALEEQLEAEREELLEELLEEEELlee 750
|
570 580
....*....|....*....|....*
gi 1907165175 1135 ----------------AELEKLRNE 1143
Cdd:COG1196 751 ealeelpeppdleeleRELERLERE 775
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
350-858 |
7.52e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.55 E-value: 7.52e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 350 TALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGHDQHVLELEAKMDQLRTM---VEAADREKVEL 426
Cdd:TIGR02168 340 AELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLearLERLEDRRERL 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 427 LNQLEEEKRKVEDLQFRVEEESITKGDLEQKSPISEDPENVATVSE-KSRIMELEKDLALRAQEVAELRRRLES------ 499
Cdd:TIGR02168 420 QQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEElREELEEAEQALDAAERELAQLQARLDSlerlqe 499
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 500 ----------------SKPPGDVDMSLSLL-------QEIS-ALQEKLEAIHTD----------HQGEMTSLKEHFGARE 545
Cdd:TIGR02168 500 nlegfsegvkallknqSGLSGILGVLSELIsvdegyeAAIEaALGGRLQAVVVEnlnaakkaiaFLKQNELGRVTFLPLD 579
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 546 EAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIALWKSKLETAiASHQQAMEELK------------------- 606
Cdd:TIGR02168 580 SIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVV-DDLDNALELAKklrpgyrivtldgdlvrpg 658
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 607 -------VSFSKGIGTDSAEFAELKTQIERLrldyQHEIESLQSKQDSERSAHAkEMETMQAKLMKIIKEKEDSLEAVKA 679
Cdd:TIGR02168 659 gvitggsAKTNSSILERRREIEELEEKIEEL----EEKIAELEKALAELRKELE-ELEEELEQLRKELEELSRQISALRK 733
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 680 RLDSAEDQH-----------------LVEMEDTLNKLQEAEIKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQ 742
Cdd:TIGR02168 734 DLARLEAEVeqleeriaqlskeltelEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELT 813
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 743 TLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIM 822
Cdd:TIGR02168 814 LLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLR 893
|
570 580 590
....*....|....*....|....*....|....*.
gi 1907165175 823 KMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANE 858
Cdd:TIGR02168 894 SELEELSEELRELESKRSELRRELEELREKLAQLEL 929
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
685-1240 |
1.33e-12 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 72.90 E-value: 1.33e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 685 EDQHLVEMEDTLNKLQEAEIKANSITKELQEKElvltglqdslNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQD 764
Cdd:pfam01576 3 QEEEMQAKEEELQKVKERQQKAESELKELEKKH----------QQLCEEKNALQEQLQAETELCAEAEEMRARLAARKQE 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 765 TVNKLH-------QKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQL----VKAKEKLENDIAEIMKMSGDNSsqlt 833
Cdd:pfam01576 73 LEEILHelesrleEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLqlekVTTEAKIKKLEEDILLLEDQNS---- 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 834 KMNDELRLKERSVEELQLKLTKANENASFLQK---------SIGEVTLKAEQSQQQAARKHEEEKKELEEKLLElekkme 904
Cdd:pfam01576 149 KLSKERKLLEERISEFTSNLAEEEEKAKSLSKlknkheamiSDLEERLKKEEKGRQELEKAKRKLEGESTDLQE------ 222
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 905 tsynQCQDLKAKYEKASSETKTKHEEiLQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQ--I 982
Cdd:pfam01576 223 ----QIAELQAQIAELRAQLAKKEEE-LQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRrdL 297
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 983 MEQMTKEKTEtlasLEDTKQTNArLQNELDTLKENNL----KTVEELNKS-----KELLSVENQKMEEFKKEIETLKQAA 1053
Cdd:pfam01576 298 GEELEALKTE----LEDTLDTTA-AQQELRSKREQEVtelkKALEEETRSheaqlQEMRQKHTQALEELTEQLEQAKRNK 372
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1054 AQKSQQLSALQEENVKLAEELgrtRDEVTSHQKLEEERSVLNNQLLEMKKRESE---FRKDADEEKASLQKSISLTSALL 1130
Cdd:pfam01576 373 ANLEKAKQALESENAELQAEL---RTLQQAKQDSEHKRKKLEGQLQELQARLSEserQRAELAEKLSKLQSELESVSSLL 449
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1131 TEKDAELEKLRNEVTVLRGENATAKSLhsvVQTLESDKVKLELKVKNLELQLKENKRQLSsssgntdaqaEEDERAQESQ 1210
Cdd:pfam01576 450 NEAEGKNIKLSKDVSSLESQLQDTQEL---LQEETRQKLNLSTRLRQLEDERNSLQEQLE----------EEEEAKRNVE 516
|
570 580 590
....*....|....*....|....*....|
gi 1907165175 1211 QMIDFLNSVIVDLQRKNQDLKMKVEMMSEA 1240
Cdd:pfam01576 517 RQLSTLQAQLSDMKKKLEEDAGTLEALEEG 546
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
427-1116 |
1.93e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 72.48 E-value: 1.93e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 427 LNQLEEEKRKVEDLQFRVEEESITKGDLEQKSPISEDpenvATVSEKSRIMELEKdlALRAQEVAELRRRLESSKPPGDV 506
Cdd:PTZ00121 1066 VGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEE----AKKTETGKAEEARK--AEEAKKKAEDARKAEEARKAEDA 1139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 507 DMSlsllqEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAfqKEIKALHTATEklSKENESLRSKLDHANKENSDVIAL 586
Cdd:PTZ00121 1140 RKA-----EEARKAEDAKRVEIARKAEDARKAEEARKAEDA--KKAEAARKAEE--VRKAEELRKAEDARKAEAARKAEE 1210
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 587 WKSKLETAIASHQQAMEELKVSFSKGIGTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEMETM-QAKLMK 665
Cdd:PTZ00121 1211 ERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELkKAEEKK 1290
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 666 IIKEKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAEIKANSITKELQEKElvltglqdSLNQVNQVKETLEKELQTLK 745
Cdd:PTZ00121 1291 KADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAK--------KAAEAAKAEAEAAADEAEAA 1362
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 746 EKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMS 825
Cdd:PTZ00121 1363 EEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEE 1442
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 826 GDNSSQLTKMNDELRLKERSVE--ELQLKLTKANENASFLQKSiGEVTLKAEQSQQQA--ARKHEEEKKELEEKLLELEK 901
Cdd:PTZ00121 1443 AKKADEAKKKAEEAKKAEEAKKkaEEAKKADEAKKKAEEAKKA-DEAKKKAEEAKKKAdeAKKAAEAKKKADEAKKAEEA 1521
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 902 KMETSYNQCQDLKAKYEKASSETKTKHEEILQnlQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQ 981
Cdd:PTZ00121 1522 KKADEAKKAEEAKKADEAKKAEEKKKADELKK--AEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMK 1599
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 982 IMEQMTKEKTETLASLEDTKQTNARLQNE---------LDTLKENNLKTVEELNKSKELLSV----ENQKMEEFKKEIET 1048
Cdd:PTZ00121 1600 LYEEEKKMKAEEAKKAEEAKIKAEELKKAeeekkkveqLKKKEAEEKKKAEELKKAEEENKIkaaeEAKKAEEDKKKAEE 1679
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907165175 1049 LKQAAAQKSQQLSAL--QEENVKLAEELGRTR-DEVTSHQKLEEERSVLNNQLLEMKKRESEFRKDADEEK 1116
Cdd:PTZ00121 1680 AKKAEEDEKKAAEALkkEAEEAKKAEELKKKEaEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAK 1750
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
839-1184 |
2.79e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 71.63 E-value: 2.79e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 839 LRLKERSvEELQLKLTKANENASFLQKSIGEV-----TL-----KAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYN 908
Cdd:TIGR02168 168 SKYKERR-KETERKLERTRENLDRLEDILNELerqlkSLerqaeKAERYKELKAELRELELALLVLRLEELREELEELQE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 909 QCQDLKAKYEKASSETKTKHEEILQNLQKMLADtEDKLKAAQEANRDLMQDMEELKTQadKAKAAQTAEDAMQIMEQMTK 988
Cdd:TIGR02168 247 ELKEAEEELEELTAELQELEEKLEELRLEVSEL-EEEIEELQKELYALANEISRLEQQ--KQILRERLANLERQLEELEA 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 989 EKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENV 1068
Cdd:TIGR02168 324 QLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1069 KLAEELGRTRDEVtshQKLEEERSVLNNQLLEMKKRESEFRKDA-DEEKASLQKSISLTSALLTEKDAELEKLRNEVTVL 1147
Cdd:TIGR02168 404 RLEARLERLEDRR---ERLQQEIEELLKKLEEAELKELQAELEElEEELEELQEELERLEEALEELREELEEAEQALDAA 480
|
330 340 350
....*....|....*....|....*....|....*..
gi 1907165175 1148 RGENATAKSLHSVVQTLESDKVKLELKVKNLELQLKE 1184
Cdd:TIGR02168 481 ERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSG 517
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
479-1247 |
2.96e-12 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 71.69 E-value: 2.96e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 479 LEKDLALRAQEVAELRRRLESSKPPGDvDMSLSLLQEISALQEKLEAIHTDHQGeMTSLKEhfgaREEAFQKEIKalhTA 558
Cdd:pfam15921 76 IERVLEEYSHQVKDLQRRLNESNELHE-KQKFYLRQSVIDLQTKLQEMQMERDA-MADIRR----RESQSQEDLR---NQ 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 559 TEKLSKENESLRS-KLDHANKENSDVIALWKSKLetaiaSHQQAMEElkvsfskgigtdsaefaelktqIERLRLDYQHE 637
Cdd:pfam15921 147 LQNTVHELEAAKClKEDMLEDSNTQIEQLRKMML-----SHEGVLQE----------------------IRSILVDFEEA 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 638 IESLQSKQDSERSAHAKEMETmqaKLMKIIKEKEDSLEAVKARLDSAEDQHLVEMEDTLNKLqeaeikansitkelqekE 717
Cdd:pfam15921 200 SGKKIYEHDSMSTMHFRSLGS---AISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKI-----------------E 259
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 718 LVLTGLQDslnQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQ----DTVNKLHQKEEQFNVLSSELEKLRENLTDM 793
Cdd:pfam15921 260 LLLQQHQD---RIEQLISEHEVEITGLTEKASSARSQANSIQSQLEiiqeQARNQNSMYMRQLSDLESTVSQLRSELREA 336
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 794 EAKFKEK-DDREDQLVKAKEKLENDIAE---IMKMSGDNSSQLTKMNDEL--RLKERSVEELQLKLTKANENASFLqkSI 867
Cdd:pfam15921 337 KRMYEDKiEELEKQLVLANSELTEARTErdqFSQESGNLDDQLQKLLADLhkREKELSLEKEQNKRLWDRDTGNSI--TI 414
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 868 GEVTLKAEQSQQQAARkheeekkeleeklleLEKKMETSYNQCQDlKAKYEKASSETKTKHEEILQNLQKMLADTEDKL- 946
Cdd:pfam15921 415 DHLRRELDDRNMEVQR---------------LEALLKAMKSECQG-QMERQMAAIQGKNESLEKVSSLTAQLESTKEMLr 478
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 947 KAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMqimEQMTKEKTETLASLEDTKQTNARLQNELDTLKenNLKTveELN 1026
Cdd:pfam15921 479 KVVEELTAKKMTLESSERTVSDLTASLQEKERAI---EATNAEITKLRSRVDLKLQELQHLKNEGDHLR--NVQT--ECE 551
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1027 KSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEERsvlnnqllEMKKRES 1106
Cdd:pfam15921 552 ALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKK--------DAKIREL 623
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1107 EFR-KDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGE-NATAKSLHSVVQTLESDKVKLELKVKNLELQLKE 1184
Cdd:pfam15921 624 EARvSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNElNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKS 703
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907165175 1185 NKRQLSSSSGNTDAQAEEDERAQESQQMidfLNSVIVDLQRKNQDLKMKVEMMSEAALNGNGE 1247
Cdd:pfam15921 704 AQSELEQTRNTLKSMEGSDGHAMKVAMG---MQKQITAKRGQIDALQSKIQFLEEAMTNANKE 763
|
|
| NIP100 |
COG5244 |
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ... |
60-121 |
4.04e-12 |
|
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 227569 [Multi-domain] Cd Length: 669 Bit Score: 70.87 E-value: 4.04e-12
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907165175 60 VGERVWVNGNKpGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRP 121
Cdd:COG5244 6 VNDRVLLGDKF-GTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIFIRP 66
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
549-1189 |
1.04e-11 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 69.75 E-value: 1.04e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 549 QKEIKALHTATEKLSKENESLRSKLDHANKENSDVIA------LWKSKLETAIAS----------HQQAMEELKVSFSKG 612
Cdd:pfam05483 112 RKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKennatrHLCNLLKETCARsaektkkyeyEREETRQVYMDLNNN 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 613 IGTDSAEFAELKTQIERLRLDYQHEIeslqsKQDSERSAHAKEmetmqaKLMKIIKEKEDSLEAVKARLDSAEDQhlveM 692
Cdd:pfam05483 192 IEKMILAFEELRVQAENARLEMHFKL-----KEDHEKIQHLEE------EYKKEINDKEKQVSLLLIQITEKENK----M 256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 693 EDTLNKLQEAEIKANsitkELQEKelvlTGLQD-SLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQ 771
Cdd:pfam05483 257 KDLTFLLEESRDKAN----QLEEK----TKLQDeNLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQ 328
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 772 KEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAK----EKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVE 847
Cdd:pfam05483 329 LTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEqqrlEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELE 408
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 848 ELQLKL----TKANENASFlqKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEK---A 920
Cdd:pfam05483 409 ELKKILaedeKLLDEKKQF--EKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKeklK 486
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 921 SSETKTKHEEILQNLQKMLADTED---KLKAAQEANRDLMQDMEELKTQADKAKAAQTA-EDAMQIMEQMTKEKTETLAS 996
Cdd:pfam05483 487 NIELTAHCDKLLLENKELTQEASDmtlELKKHQEDIINCKKQEERMLKQIENLEEKEMNlRDELESVREEFIQKGDEVKC 566
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 997 LEDTKQTNARLQNELDTLKENNLKTVE-ELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELG 1075
Cdd:pfam05483 567 KLDKSEENARSIEYEVLKKEKQMKILEnKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELA 646
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1076 RTRDE----VTSHQKLEEERSVLNNQLLEmkkrESEFRKDADEEKASLQKSISL-TSALLTEKDAELEKLRNEVTVLRGE 1150
Cdd:pfam05483 647 SAKQKfeeiIDNYQKEIEDKKISEEKLLE----EVEKAKAIADEAVKLQKEIDKrCQHKIAEMVALMEKHKHQYDKIIEE 722
|
650 660 670 680
....*....|....*....|....*....|....*....|
gi 1907165175 1151 NATAKSLH-SVVQTLESDKVKLELKVKNLELQLKENKRQL 1189
Cdd:pfam05483 723 RDSELGLYkNKEQEQSSAKAALEIELSNIKAELLSLKKQL 762
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
542-1179 |
1.16e-11 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 69.68 E-value: 1.16e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 542 GAREEAFQKEIKALHTATEKLSKENESLRSKLDHANkENSDVIALWKSKLETAIASHQQAMEELkvsfskgigtdsaefA 621
Cdd:PRK02224 191 QLKAQIEEKEEKDLHERLNGLESELAELDEEIERYE-EQREQARETRDEADEVLEEHEERREEL---------------E 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 622 ELKTQIERLRLDyqheieslQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEavKARLDSAEDQHLVEMEDTLNKLQE 701
Cdd:PRK02224 255 TLEAEIEDLRET--------IAETEREREELAEEVRDLRERLEELEEERDDLLA--EAGLDDADAEAVEARREELEDRDE 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 702 AeikansitkelqekelvltgLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSS 781
Cdd:PRK02224 325 E--------------------LRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRRE 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 782 ELEKLRENLTDMEAKFkekDDREDQLVKAKEKLEndiaEIMKMSGDNSSQLTKMNDELRLKERSVEElqlkltkanenas 861
Cdd:PRK02224 385 EIEELEEEIEELRERF---GDAPVDLGNAEDFLE----ELREERDELREREAELEATLRTARERVEE------------- 444
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 862 flqksiGEVTLKA----EQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKT-----KHEEIL 932
Cdd:PRK02224 445 ------AEALLEAgkcpECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAedrieRLEERR 518
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 933 QNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQAD-KAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNEL 1011
Cdd:PRK02224 519 EDLEELIAERRETIEEKRERAEELRERAAELEAEAEeKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLL 598
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1012 DTLkENNLKTVEELN-KSKELLSVENQKMEefkkeietlkqaaaqksqQLSALQEENVKLAEELGRTRDEvTSHQKLEEE 1090
Cdd:PRK02224 599 AAI-ADAEDEIERLReKREALAELNDERRE------------------RLAEKRERKRELEAEFDEARIE-EAREDKERA 658
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1091 RSVLNNqlLEMKKRESEfrkdadEEKASLQKSIsltsALLTEKDAELEKLRNEVTVLRGENATAKSLHSVVQTLES--DK 1168
Cdd:PRK02224 659 EEYLEQ--VEEKLDELR------EERDDLQAEI----GAVENELEELEELRERREALENRVEALEALYDEAEELESmyGD 726
|
650
....*....|.
gi 1907165175 1169 VKLELKVKNLE 1179
Cdd:PRK02224 727 LRAELRQRNVE 737
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
783-1191 |
2.67e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 68.17 E-value: 2.67e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 783 LEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSV----------EELQLK 852
Cdd:PRK03918 160 YENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELeklekevkelEELKEE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 853 LTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELE-KKMETSYNQCQDLKAKYEKASSE---TKTKH 928
Cdd:PRK03918 240 IEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKElKEKAEEYIKLSEFYEEYLDELREiekRLSRL 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 929 EEILQNLQKMLADTEDK---LKAAQEANRDLMQDMEELKtqadkaKAAQTAEDAMQIMEQMTKEKTETlasledTKQTNA 1005
Cdd:PRK03918 320 EEEINGIEERIKELEEKeerLEELKKKLKELEKRLEELE------ERHELYEEAKAKKEELERLKKRL------TGLTPE 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1006 RLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEEN-----VKLAEELGRTRDE 1080
Cdd:PRK03918 388 KLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHrkellEEYTAELKRIEKE 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1081 VtshQKLEEERSVLNNQLLEMKK---RESEF---RKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGENATA 1154
Cdd:PRK03918 468 L---KEIEEKERKLRKELRELEKvlkKESELiklKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSL 544
|
410 420 430
....*....|....*....|....*....|....*..
gi 1907165175 1155 KSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSS 1191
Cdd:PRK03918 545 KKELEKLEELKKKLAELEKKLDELEEELAELLKELEE 581
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
351-879 |
4.38e-11 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 67.76 E-value: 4.38e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 351 ALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELalardghdQHVLELEAKMDQLRTMVEAADREKVELLNQL 430
Cdd:PRK02224 210 GLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERR--------EELETLEAEIEDLRETIAETEREREELAEEV 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 431 EEEKRKVEDLQfrvEEESITKGDLEQKSPiseDPENVAtvsekSRIMELEKDLALRAQEVAELRRRLESSKPPGDvdmsl 510
Cdd:PRK02224 282 RDLRERLEELE---EERDDLLAEAGLDDA---DAEAVE-----ARREELEDRDEELRDRLEECRVAAQAHNEEAE----- 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 511 SLLQEISALQEKLEAIHT---DHQGEMTSLKEHFGARE---EAFQKEIKALH-------TATEKLSKENESLRSKLDHAN 577
Cdd:PRK02224 346 SLREDADDLEERAEELREeaaELESELEEAREAVEDRReeiEELEEEIEELRerfgdapVDLGNAEDFLEELREERDELR 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 578 KENSDVIALWKSkLETAIASHQQAMEELKV----------SFSKGIGTDSAEFAELKTQIERLRLdyqhEIESLQSKQDS 647
Cdd:PRK02224 426 EREAELEATLRT-ARERVEEAEALLEAGKCpecgqpvegsPHVETIEEDRERVEELEAELEDLEE----EVEEVEERLER 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 648 ERSAH--AKEMETMQAK---LMKIIKEKEDSLEAVKARLDS---AEDQHLVEMEDTLNKLQEAEIKANSITKELQEKELV 719
Cdd:PRK02224 501 AEDLVeaEDRIERLEERredLEELIAERRETIEEKRERAEElreRAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSK 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 720 LTGLQDSLNQVNQVKETLEK------ELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFN-----VLSSELEKLRE 788
Cdd:PRK02224 581 LAELKERIESLERIRTLLAAiadaedEIERLREKREALAELNDERRERLAEKRERKRELEAEFDearieEAREDKERAEE 660
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 789 NLTDMEAKFKEKDDREDQLVKAKEKLENDIAEImkmsgdnssqltkmnDELRLKERSVEELQLKLTKANENASFLQKSIG 868
Cdd:PRK02224 661 YLEQVEEKLDELREERDDLQAEIGAVENELEEL---------------EELRERREALENRVEALEALYDEAEELESMYG 725
|
570
....*....|.
gi 1907165175 869 EvtLKAEQSQQ 879
Cdd:PRK02224 726 D--LRAELRQR 734
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
356-1035 |
6.81e-11 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 67.07 E-value: 6.81e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 356 LKEKQQHIEQLLAERDLE----RAEVAKATSHVGEIEQELAL----ARDGHD---QHVLELEAKMDQLRTMVEAADREKV 424
Cdd:pfam15921 262 LQQHQDRIEQLISEHEVEitglTEKASSARSQANSIQSQLEIiqeqARNQNSmymRQLSDLESTVSQLRSELREAKRMYE 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 425 ELLNQLEEE-----------------------------KRKVEDLQFRVEEESITKGdlEQKSPISEDPENVATVSE--- 472
Cdd:pfam15921 342 DKIEELEKQlvlanseltearterdqfsqesgnlddqlQKLLADLHKREKELSLEKE--QNKRLWDRDTGNSITIDHlrr 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 473 --KSRIMELEKDLAL------------------------RAQEVAELRRRLESSKppgdvDMSLSLLQEISALQEKLEAI 526
Cdd:pfam15921 420 elDDRNMEVQRLEALlkamksecqgqmerqmaaiqgkneSLEKVSSLTAQLESTK-----EMLRKVVEELTAKKMTLESS 494
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 527 HTDHQGEMTSLKEHFGAREeAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIAL-----WKSKLETAIASHQQA 601
Cdd:pfam15921 495 ERTVSDLTASLQEKERAIE-ATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALklqmaEKDKVIEILRQQIEN 573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 602 MEELKVSFSKGIGTDSAEFAELKTQIERLRLDYQhEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKaRL 681
Cdd:pfam15921 574 MTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQ-EFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVK-DI 651
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 682 DSAEDQHLVEMEDTLNKL----QEAEIKANSITKELQEKELVLTGLQdslNQVNQVKETLEKELQTLKEKFASTSEeAVS 757
Cdd:pfam15921 652 KQERDQLLNEVKTSRNELnslsEDYEVLKRNFRNKSEEMETTTNKLK---MQLKSAQSELEQTRNTLKSMEGSDGH-AMK 727
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 758 AQTRMQDTVNKlhqKEEQFNVLSSELEKLRENLTDMEakfKEKDDREDQLVKAKEKLENDIAEIMKMSGDNssqltkmnD 837
Cdd:pfam15921 728 VAMGMQKQITA---KRGQIDALQSKIQFLEEAMTNAN---KEKHFLKEEKNKLSQELSTVATEKNKMAGEL--------E 793
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 838 ELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEkllelekkmeTSYNQCQDLKAKY 917
Cdd:pfam15921 794 VLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTLDVKELQG----------PGYTSNSSMKPRL 863
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 918 EKASSETKTkHEEI--LQNLQKMLADTEDKLKAAQE-ANRDLMQDMEELKTQADKakaaqtaEDAMQIMEQMTKEKTETL 994
Cdd:pfam15921 864 LQPASFTRT-HSNVpsSQSTASFLSHHSRKTNALKEdPTRDLKQLLQELRSVINE-------EPTVQLSKAEDKGRAPSL 935
|
730 740 750 760
....*....|....*....|....*....|....*....|....
gi 1907165175 995 ASLEDTKQ---TNARLQNELDTLKENNLKTveELNKSKELLSVE 1035
Cdd:pfam15921 936 GALDDRVRdciIESSLRSDICHSSSNSLQT--EGSKSSETCSRE 977
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
697-1192 |
9.04e-11 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 66.58 E-value: 9.04e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 697 NKLQEAEIKANSITKELQEKELVLTGLQDSL-------NQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKL 769
Cdd:TIGR04523 33 TEEKQLEKKLKTIKNELKNKEKELKNLDKNLnkdeekiNNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEI 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 770 HQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEEL 849
Cdd:TIGR04523 113 KNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKI 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 850 QLKLTKANENASFLQKSIGEV-TLKAEQSQQQAARKH-EEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTK 927
Cdd:TIGR04523 193 KNKLLKLELLLSNLKKKIQKNkSLESQISELKKQNNQlKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEK 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 928 HEEILQNLQKmLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTetlaSLEDTKQTNARL 1007
Cdd:TIGR04523 273 QKELEQNNKK-IKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNK----IISQLNEQISQL 347
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1008 QNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETL--------------KQAAAQKSQQLSALQEENVKLAEE 1073
Cdd:TIGR04523 348 KKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLesqindleskiqnqEKLNQQKDEQIKKLQQEKELLEKE 427
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1074 LGRTRDEVTSHQK----LEEERSVLNNQLLEMKKRESEFRKDADEEKAS---LQKSISLTSALLTEKDAELEKLRNEVTV 1146
Cdd:TIGR04523 428 IERLKETIIKNNSeikdLTNQDSVKELIIKNLDNTRESLETQLKVLSRSinkIKQNLEQKQKELKSKEKELKKLNEEKKE 507
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1147 LRGENATAK----SLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSS 1192
Cdd:TIGR04523 508 LEEKVKDLTkkisSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKE 557
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
624-1139 |
9.76e-11 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 66.20 E-value: 9.76e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 624 KTQIERLRLDYQHEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQhlveMEDTLNKLQEAE 703
Cdd:TIGR04523 191 KIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQ----LNQLKDEQNKIK 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 704 IKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKfaSTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSEL 783
Cdd:TIGR04523 267 KQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNK--ELKSELKNQEKKLEEIQNQISQNNKIISQLNEQI 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 784 EKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFL 863
Cdd:TIGR04523 345 SQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELL 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 864 QKSIGEvtLKAEQSQQQAARKheeekkeleeKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEI---LQNLQKMLA 940
Cdd:TIGR04523 425 EKEIER--LKETIIKNNSEIK----------DLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIkqnLEQKQKELK 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 941 DTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTA-EDAMQIMEQMTKEKTETLASLEDTKQTNA------RLQNELDT 1013
Cdd:TIGR04523 493 SKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKlESEKKEKESKISDLEDELNKDDFELKKENlekeidEKNKEIEE 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1014 LKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELgrtRDEVTSHQKLEEERSV 1093
Cdd:TIGR04523 573 LKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSII---KNIKSKKNKLKQEVKQ 649
|
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 1907165175 1094 LNNQLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEK 1139
Cdd:TIGR04523 650 IKETIKEIRNKWPEIIKKIKESKTKIDDIIELMKDWLKELSLHYKK 695
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
420-1264 |
1.02e-10 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 66.53 E-value: 1.02e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 420 DREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEQKSPISEDPENVATVSEKSRIMELEKDLALRAQEVAELRRRLES 499
Cdd:pfam02463 168 KRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLR 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 500 SKppgdVDMSLSLLQEISALQEKLEAIHTDHQGEMtslkehfgaREEAFQKEIKALHTATEKLSKENESLRSKLDHANKE 579
Cdd:pfam02463 248 DE----QEEIESSKQEIEKEEEKLAQVLKENKEEE---------KEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEE 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 580 NSDVIALWKSKLETAIASHQQAMEELKVSFSKGIGTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEMETM 659
Cdd:pfam02463 315 KLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKE 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 660 QAKLMKIIKEKEDSLEAVKARldsaedqhlvemedtlnklQEAEIKANSITKELQEKELVLTGLQDSLNQVNQVKETLEK 739
Cdd:pfam02463 395 EELELKSEEEKEAQLLLELAR-------------------QLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEK 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 740 ELQTLKEKFASTSEEAVSAQTRmQDTVNKLHQKEEqfnvlssELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIA 819
Cdd:pfam02463 456 QELKLLKDELELKKSEDLLKET-QLVKLQEQLELL-------LSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISA 527
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 820 EIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLEL 899
Cdd:pfam02463 528 HGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQ 607
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 900 EKKMETSYNQCQ-DLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAED 978
Cdd:pfam02463 608 LDKATLEADEDDkRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAES 687
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 979 AMQIMEQmtKEKTETLASLEDTKQTNARLQNELDTLKENNLKTvEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQ 1058
Cdd:pfam02463 688 ELAKEEI--LRRQLEIKKKEQREKEELKKLKLEAEELLADRVQ-EAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEE 764
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1059 QLSALQEENVKLAEELGRTRDEVtshqKLEEERSVLNNQLLEMKKRESEfRKDADEEKASLQKSISLTSALLTEKDAELE 1138
Cdd:pfam02463 765 EKSELSLKEKELAEEREKTEKLK----VEEEKEEKLKAQEEELRALEEE-LKEEAELLEEEQLLIEQEEKIKEEELEELA 839
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1139 KLRNEVTVLRGENATAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQaEEDERAQESQQMIDFLNS 1218
Cdd:pfam02463 840 LELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKK-ELEEESQKLNLLEEKENE 918
|
810 820 830 840
....*....|....*....|....*....|....*....|....*.
gi 1907165175 1219 VIVDLQRKNQDLKMKVEMMSEAALNGNGEDLNSYDSDDQEKQSKKK 1264
Cdd:pfam02463 919 IEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKR 964
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
654-1237 |
1.41e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.11 E-value: 1.41e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 654 KEMETMQAKLMK---IIKEKEDSLE-----AVKAR----LDSAEDQHLVEMedTLNKLQEAEIKANSITKELQEKELVLT 721
Cdd:COG1196 179 RKLEATEENLERledILGELERQLEplerqAEKAEryreLKEELKELEAEL--LLLKLRELEAELEELEAELEELEAELE 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 722 GLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKD 801
Cdd:COG1196 257 ELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELE 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 802 DREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQA 881
Cdd:COG1196 337 EELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERL 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 882 ARKHEEEKKELEEKLLELEKKMETsynqcqdlkAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDME 961
Cdd:COG1196 417 ERLEEELEELEEALAELEEEEEEE---------EEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELA 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 962 ELKTQADKAKAAQTAEDAMQIMEQMTKEKTEtLASLEDTKQTNARLQNELDT---------LKENNLKTVEELNKSKELL 1032
Cdd:COG1196 488 EAAARLLLLLEAEADYEGFLEGVKAALLLAG-LRGLAGAVAVLIGVEAAYEAaleaalaaaLQNIVVEDDEVAAAAIEYL 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1033 SVENQKMEEFkKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKR------ES 1106
Cdd:COG1196 567 KAAKAGRATF-LPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRravtlaGR 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1107 EFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGENATAKSLHSVVQTLESDKVKLELKVKNLELQLKENK 1186
Cdd:COG1196 646 LREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEA 725
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....
gi 1907165175 1187 RQLSSSSGNTDAQAEEDERAQESQQMIDFLNSVIVD---LQRKNQDLKMKVEMM 1237
Cdd:COG1196 726 LEEQLEAEREELLEELLEEEELLEEEALEELPEPPDleeLERELERLEREIEAL 779
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
351-973 |
2.16e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.34 E-value: 2.16e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 351 ALQEALKEKQqhIEQLLAERDLERAEVAKATSHVGEIEQELALARdghdQHVLELEAKMDQLRTMVEAADREKVELLNQL 430
Cdd:COG1196 217 ELKEELKELE--AELLLLKLRELEAELEELEAELEELEAELEELE----AELAELEAELEELRLELEELELELEEAQAEE 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 431 EEEKRKVEDLQFRVEEESITKGDLEQKSpisedpenvatVSEKSRIMELEKDLALRAQEVAELRRRLEsskppgdvdmsl 510
Cdd:COG1196 291 YELLAELARLEQDIARLEERRRELEERL-----------EELEEELAELEEELEELEEELEELEEELE------------ 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 511 SLLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHANKensdvialwKSK 590
Cdd:COG1196 348 EAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLER---------LER 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 591 LETAIASHQQAMEELKvsfsKGIGTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEMETMQAKLMKiiKEK 670
Cdd:COG1196 419 LEEELEELEEALAELE----EEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEA--AAR 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 671 EDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAEIKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFAS 750
Cdd:COG1196 493 LLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAG 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 751 TSEEAVSaqtrmqdtvNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKmsgdnss 830
Cdd:COG1196 573 RATFLPL---------DKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAAL------- 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 831 qltKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQC 910
Cdd:COG1196 637 ---RRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAE 713
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907165175 911 QDLKAKYEKASSETKTKHEEILQNLQKMLADTEDkLKAAQEANRDLMQDMEELKTQADKAKAA 973
Cdd:COG1196 714 EERLEEELEEEALEEQLEAEREELLEELLEEEEL-LEEEALEELPEPPDLEELERELERLERE 775
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
358-793 |
2.79e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.08 E-value: 2.79e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 358 EKQQHIEQLlaerdleRAEVAKATSHVGEIEQELALARDGHDqhvlELEAKMDQLRTMVEAADREKVELLNQLEEEKRKV 437
Cdd:TIGR02168 674 ERRREIEEL-------EEKIEELEEKIAELEKALAELRKELE----ELEEELEQLRKELEELSRQISALRKDLARLEAEV 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 438 EDLQFRVEEESITKGDLEQKspisedpenvaTVSEKSRIMELEKDLALRAQEVAELRRRLEsskppgdvDMSLSLLQEIS 517
Cdd:TIGR02168 743 EQLEERIAQLSKELTELEAE-----------IEELEERLEEAEEELAEAEAEIEELEAQIE--------QLKEELKALRE 803
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 518 ALQEkLEAIHTDHQGEMTSLKEhfgaREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDvialwkskLETAIAS 597
Cdd:TIGR02168 804 ALDE-LRAELTLLNEEAANLRE----RLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEE--------LEELIEE 870
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 598 HQQAMEELkvsfskgigtdSAEFAELKTQIERLRLDYqheiESLQSKQDSERSaHAKEMETMQAKLMKIIKEKEDSLEAV 677
Cdd:TIGR02168 871 LESELEAL-----------LNERASLEEALALLRSEL----EELSEELRELES-KRSELRRELEELREKLAQLELRLEGL 934
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 678 KARLDSAEDQHLVEMEDTlnkLQEAEIKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKF---ASTSEE 754
Cdd:TIGR02168 935 EVRIDNLQERLSEEYSLT---LEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYdflTAQKED 1011
|
410 420 430
....*....|....*....|....*....|....*....
gi 1907165175 755 AVSAQTRMQDTVNKLhqKEEQFNVLSSELEKLRENLTDM 793
Cdd:TIGR02168 1012 LTEAKETLEEAIEEI--DREARERFKDTFDQVNENFQRV 1048
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
599-976 |
1.81e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.39 E-value: 1.81e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 599 QQAMEELKVsFSKGIGTDSAEFAELKTQIERLRLDYQHEIE--SLQS-KQDSERSAHAKEMETMqaklmkiikekEDSLE 675
Cdd:TIGR02169 173 EKALEELEE-VEENIERLDLIIDEKRQQLERLRREREKAERyqALLKeKREYEGYELLKEKEAL-----------ERQKE 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 676 AVKARLDSAEDqhlvEMEDtlnklqeaeikansITKELQEKELVLTGLQDSLNQVN-QVKETLEKELQTLKEKFASTSEE 754
Cdd:TIGR02169 241 AIERQLASLEE----ELEK--------------LTEEISELEKRLEEIEQLLEELNkKIKDLGEEEQLRVKEKIGELEAE 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 755 AVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLEndiaeimkmsgdnssqltk 834
Cdd:TIGR02169 303 IASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELK------------------- 363
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 835 mnDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELekkmetsyNQCQDLK 914
Cdd:TIGR02169 364 --EELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLN--------AAIAGIE 433
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907165175 915 AKYEKASSETKTKHEEI------LQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTA 976
Cdd:TIGR02169 434 AKINELEEEKEDKALEIkkqewkLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARA 501
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
406-1205 |
1.98e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 62.44 E-value: 1.98e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 406 EAKMDQLRTMVEAADREKVELLnqLEEEKRKVEDLQFRVEEESitkgDLEQKSPISEDpENVATVSEKSRIMELEKDLAL 485
Cdd:pfam15921 58 EVELDSPRKIIAYPGKEHIERV--LEEYSHQVKDLQRRLNESN----ELHEKQKFYLR-QSVIDLQTKLQEMQMERDAMA 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 486 -----RAQEVAELRRRLESSKPPGDVDMSLS--LLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEI------ 552
Cdd:pfam15921 131 dirrrESQSQEDLRNQLQNTVHELEAAKCLKedMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIyehdsm 210
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 553 -----KALHTATEKLSKENESLRSKLdhankenSDVIALWKSKLETAIASHQQAMEELkvsfskgigtdsaeFAELKTQI 627
Cdd:pfam15921 211 stmhfRSLGSAISKILRELDTEISYL-------KGRIFPVEDQLEALKSESQNKIELL--------------LQQHQDRI 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 628 ERLRLDYQHEIESLQSKQDSERSahakEMETMQAKlMKIIKEKEDSLEAVKARldsaedqHLVEMEDTLNKLQ----EAE 703
Cdd:pfam15921 270 EQLISEHEVEITGLTEKASSARS----QANSIQSQ-LEIIQEQARNQNSMYMR-------QLSDLESTVSQLRselrEAK 337
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 704 IKANSITKELqEKELVL-----TGLQDSLNQVNQVKETLEKELQTL------KEKFASTSEEAvsaQTRMQD-------T 765
Cdd:pfam15921 338 RMYEDKIEEL-EKQLVLanselTEARTERDQFSQESGNLDDQLQKLladlhkREKELSLEKEQ---NKRLWDrdtgnsiT 413
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 766 VNKLHQKEEQFNVlssELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERS 845
Cdd:pfam15921 414 IDHLRRELDDRNM---EVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMT 490
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 846 VEELQLklTKANENASFLQKsigEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETK 925
Cdd:pfam15921 491 LESSER--TVSDLTASLQEK---ERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIE 565
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 926 TKHEEIlQNLQKML--------ADTEDKLKAAQEANrDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEK-----TE 992
Cdd:pfam15921 566 ILRQQI-ENMTQLVgqhgrtagAMQVEKAQLEKEIN-DRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKlvnagSE 643
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 993 TLASLEDTKQTNARLQNELDTLKE--NNLKTVEEL------NKSKELLSVENQ-KME------EFKKEIETLKQAAAQKS 1057
Cdd:pfam15921 644 RLRAVKDIKQERDQLLNEVKTSRNelNSLSEDYEVlkrnfrNKSEEMETTTNKlKMQlksaqsELEQTRNTLKSMEGSDG 723
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1058 QQLSALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNnqllemkkRESEFRKdadEEKASLQKSISLTSallTEKDael 1137
Cdd:pfam15921 724 HAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNAN--------KEKHFLK---EEKNKLSQELSTVA---TEKN--- 786
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907165175 1138 eKLRNEVTVLRgenatakslhsvvqtleSDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDER 1205
Cdd:pfam15921 787 -KMAGELEVLR-----------------SQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVR 836
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
343-732 |
2.02e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.38 E-value: 2.02e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 343 ARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGHDQ----------HVLELEAKMDQL 412
Cdd:TIGR02168 666 AKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEElsrqisalrkDLARLEAEVEQL 745
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 413 RTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEQKspISEDPENVATvsEKSRIMELEKDLALRAQEVAE 492
Cdd:TIGR02168 746 EERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQ--IEQLKEELKA--LREALDELRAELTLLNEEAAN 821
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 493 LRRRLESS-KPPGDVDMSLSLLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEIKALHTATEKLSKENESLRS 571
Cdd:TIGR02168 822 LRERLESLeRRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSE 901
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 572 KLDHANKENSDVIALwKSKLETAIASHQQAMEELKVsfskgigtdsaefaELKTQIERLRLDYQ---HEIESLQSKQDSE 648
Cdd:TIGR02168 902 ELRELESKRSELRRE-LEELREKLAQLELRLEGLEV--------------RIDNLQERLSEEYSltlEEAEALENKIEDD 966
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 649 RS---AHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQHlVEMEDTLNKLQEAEIKANSITKELqekelvltgLQD 725
Cdd:TIGR02168 967 EEearRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQK-EDLTEAKETLEEAIEEIDREARER---------FKD 1036
|
....*..
gi 1907165175 726 SLNQVNQ 732
Cdd:TIGR02168 1037 TFDQVNE 1043
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
354-1069 |
2.68e-09 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 61.91 E-value: 2.68e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 354 EALKEKQQHIEQLLAER-DLERAEVAKATSHVGEIEQELALARdghdqhvlELEAKMDQLRTMVEAADReKVELLNQLEE 432
Cdd:TIGR00618 197 ELLTLRSQLLTLCTPCMpDTYHERKQVLEKELKHLREALQQTQ--------QSHAYLTQKREAQEEQLK-KQQLLKQLRA 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 433 EKRKVEDLQFRVEEESITKGDLEQKSPISEDPENVATVSEKSRIM--ELEKDLALRAQEVAELRRRLESSKPPGDVDMSL 510
Cdd:TIGR00618 268 RIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIhtELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLL 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 511 SLLQEisalQEKLEAIHTDHQgemTSLKEHFgAREEAFQKEIKALHTATEKLSKENESLRSKLDHANKEnsdvialwksk 590
Cdd:TIGR00618 348 QTLHS----QEIHIRDAHEVA---TSIREIS-CQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQRE----------- 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 591 letaiaSHQQAMEELkvSFSKGIGTDSAEFAELKTQIERLRLDYQHEIESLQSKQdsERSAHAKEMETMQAKLMKIIKEK 670
Cdd:TIGR00618 409 ------QATIDTRTS--AFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEK--LEKIHLQESAQSLKEREQQLQTK 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 671 EDSLEAVKaRLDSAEDQHLVEMEDTLNKLQEAEIKANSITKELQEKELV---LTGLQDSLNQVNQVKETLEKELQTLKEK 747
Cdd:TIGR00618 479 EQIHLQET-RKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLtrrMQRGEQTYAQLETSEEDVYHQLTSERKQ 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 748 FASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLREnLTDMEAKFKEKDDREDQLVKAKEKLENDIAEImkmsgd 827
Cdd:TIGR00618 558 RASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQD-LTEKLSEAEDMLACEQHALLRKLQPEQDLQDV------ 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 828 nSSQLTKMNDELRLKERSVEELQLKLTKANENASFL--------QKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLEL 899
Cdd:TIGR00618 631 -RLHLQQCSQELALKLTALHALQLTLTQERVREHALsirvlpkeLLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLREL 709
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 900 EKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEAN-RDLMQDMEELKTQADKAKAAQTAED 978
Cdd:TIGR00618 710 ETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHfNNNEEVTAALQTGAELSHLAAEIQF 789
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 979 AMQIMEQMTKEKTETLASLE---DTKQTNARLQNELDTLKENNLKT-VEELNKSKELLSVENQKMEEFKKEIETLKQAAA 1054
Cdd:TIGR00618 790 FNRLREEDTHLLKTLEAEIGqeiPSDEDILNLQCETLVQEEEQFLSrLEEKSATLGEITHQLLKYEECSKQLAQLTQEQA 869
|
730
....*....|....*
gi 1907165175 1055 QKSQQLSALQEENVK 1069
Cdd:TIGR00618 870 KIIQLSDKLNGINQI 884
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
355-1145 |
2.98e-09 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 61.91 E-value: 2.98e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 355 ALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGHDQHVLELEAKMDQLRTMVEAADREKVELLNQLEEEK 434
Cdd:pfam02463 228 YLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLER 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 435 RKVEDlqfrveeESITKGDLEQKSPISEDPENVATVSEKSRIMELEKDLALRAQEVAElrrrlesskppgdVDMSLSLLQ 514
Cdd:pfam02463 308 RKVDD-------EEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEE-------------EELEKLQEK 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 515 EISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIALWKSKLETA 594
Cdd:pfam02463 368 LEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLT 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 595 IASHQQAMEELKvsFSKGIGTDSAEFAELKTQIERLRLDYQHEIESLQsKQDSERSAHAKEMETMQAKLMKIIKEKEDSL 674
Cdd:pfam02463 448 EEKEELEKQELK--LLKDELELKKSEDLLKETQLVKLQEQLELLLSRQ-KLEERSQKESKARSGLKVLLALIKDGVGGRI 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 675 EAVKARLDSAEDQHLVEMEDTLNKLQEAEIKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTL-KEKFASTSE 753
Cdd:pfam02463 525 ISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIaVLEIDPILN 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 754 EAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDiAEIMKMSGDNSSQLT 833
Cdd:pfam02463 605 LAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASL-SELTKELLEIQELQE 683
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 834 KMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDL 913
Cdd:pfam02463 684 KAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKE 763
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 914 KAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTET 993
Cdd:pfam02463 764 EEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELK 843
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 994 LASLEDTK-QTNARLQNELDTLKENNLKTVEELNKSKELLSV-ENQKMEEFKKEIETLKQAAAQKSQQL----SALQEEN 1067
Cdd:pfam02463 844 EEQKLEKLaEEELERLEEEITKEELLQELLLKEEELEEQKLKdELESKEEKEKEEKKELEEESQKLNLLeekeNEIEERI 923
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1068 VKLAEELGRTRDEVT--------------SHQKLEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEK 1133
Cdd:pfam02463 924 KEEAEILLKYEEEPEellleeadekekeeNNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEE 1003
|
810
....*....|..
gi 1907165175 1134 DAELEKLRNEVT 1145
Cdd:pfam02463 1004 KKKLIRAIIEET 1015
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
368-1040 |
3.41e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 61.70 E-value: 3.41e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 368 AERDLERAEVAKATSHVGEIEQELALARDGHDQHVLELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEE 447
Cdd:PTZ00121 1324 AEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEED 1403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 448 SITKGDLEQKSPISEDPENVATVSEKSRIMELEKDLALRAQEVAELRRRLEsskppgdvdmslsllqeisalqEKLEAIH 527
Cdd:PTZ00121 1404 KKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAE----------------------EAKKAEE 1461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 528 TDHQGEMTSLKEHFGAREEAFQKeikalhtaTEKLSKENESLRSKLDHANKENSDVialwKSKLETAIASHQQAMEELKV 607
Cdd:PTZ00121 1462 AKKKAEEAKKADEAKKKAEEAKK--------ADEAKKKAEEAKKKADEAKKAAEAK----KKADEAKKAEEAKKADEAKK 1529
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 608 SFSKGiGTDSAEFAELKTQIERLRldYQHEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQ 687
Cdd:PTZ00121 1530 AEEAK-KADEAKKAEEKKKADELK--KAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKK 1606
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 688 HLVEmedTLNKLQEAEIKANSITKELQEKElvltglqdslnQVNQVKETLEKELQTLKEKfastseeavsaqtrmqdtvn 767
Cdd:PTZ00121 1607 MKAE---EAKKAEEAKIKAEELKKAEEEKK-----------KVEQLKKKEAEEKKKAEEL-------------------- 1652
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 768 klhQKEEQFNVLSSELEKLREnltdmeakfkEKDDREDQLVKAKEKLENDIAEimkmsgdnssQLTKMNDElrlkERSVE 847
Cdd:PTZ00121 1653 ---KKAEEENKIKAAEEAKKA----------EEDKKKAEEAKKAEEDEKKAAE----------ALKKEAEE----AKKAE 1705
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 848 ELQLKLTKANENASFLQKSIGEVTLKAEQSQQQA---ARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSET 924
Cdd:PTZ00121 1706 ELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAeedKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEEL 1785
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 925 KTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTN 1004
Cdd:PTZ00121 1786 DEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGN 1865
|
650 660 670
....*....|....*....|....*....|....*...
gi 1907165175 1005 ArlqnELDTLKENNLKT--VEELNKSKELLSVENQKME 1040
Cdd:PTZ00121 1866 K----EADFNKEKDLKEddEEEIEEADEIEKIDKDDIE 1899
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
538-1052 |
2.90e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 58.54 E-value: 2.90e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 538 KEHFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIALWKsKLEtAIASHQQAMEELKVSFSKGIGTDS 617
Cdd:PRK03918 181 LEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVK-ELE-ELKEEIEELEKELESLEGSKRKLE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 618 AEFAELKTQIERLRLdyqhEIESLQSKQdsERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQhLVEMEDTLN 697
Cdd:PRK03918 259 EKIRELEERIEELKK----EIEELEEKV--KELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEE-INGIEERIK 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 698 KLQEAEIKANSITKELQEKELVLTGLQDSLNQVNQVKEtLEKELQTLKEKFASTS--------EEAVSAQTRMQDTVNKL 769
Cdd:PRK03918 332 ELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKA-KKEELERLKKRLTGLTpeklekelEELEKAKEEIEEEISKI 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 770 HQKEEQFNVLSSEL------------------------------EKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIA 819
Cdd:PRK03918 411 TARIGELKKEIKELkkaieelkkakgkcpvcgrelteehrkellEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLK 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 820 EIMKMSgdnssQLTKMNDELR-----LKERSVEELQLKLTKANENASFLQKSIGEV-TLKAEQSQQQAARKHEEEKKELE 893
Cdd:PRK03918 491 KESELI-----KLKELAEQLKeleekLKKYNLEELEKKAEEYEKLKEKLIKLKGEIkSLKKELEKLEELKKKLAELEKKL 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 894 EKLLELEKKMETSYNQ------------CQDLKAKYEKASSETKTKHEeiLQNLQKMLADTEDKLKAAQEANRDLMQDME 961
Cdd:PRK03918 566 DELEEELAELLKELEElgfesveeleerLKELEPFYNEYLELKDAEKE--LEREEKELKKLEEELDKAFEELAETEKRLE 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 962 ELKTQADKAKAAQTAEDAMQIMEQMTKEKTETlasledtkqtnARLQNELDTLKennlKTVEELNKSKELLSVENQKMEE 1041
Cdd:PRK03918 644 ELRKELEELEKKYSEEEYEELREEYLELSREL-----------AGLRAELEELE----KRREEIKKTLEKLKEELEEREK 708
|
570
....*....|.
gi 1907165175 1042 FKKEIETLKQA 1052
Cdd:PRK03918 709 AKKELEKLEKA 719
|
|
| CLIP1_ZNF |
pfam16641 |
CLIP1 zinc knuckle; This zinc knuckle domain is found tandemly repeated at the C-terminal of ... |
1306-1322 |
9.69e-08 |
|
CLIP1 zinc knuckle; This zinc knuckle domain is found tandemly repeated at the C-terminal of the cytoplasmic linker protein CLIP1 (CLIP170). It forms a complex with the CAP-Gly domain of Dynactin.
Pssm-ID: 465212 Cd Length: 17 Bit Score: 49.00 E-value: 9.69e-08
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
656-1104 |
1.05e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 56.31 E-value: 1.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 656 METMQAKLMKIIKEKEDSLEAVKARLDSAEDQHLVEMEDTLnklqeaeikansitKELQEKELVLTGLQDSLNQVNQVKE 735
Cdd:COG4717 40 LAFIRAMLLERLEKEADELFKPQGRKPELNLKELKELEEEL--------------KEAEEKEEEYAELQEELEELEEELE 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 736 TLEKELQTLKEKFastseEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLE 815
Cdd:COG4717 106 ELEAELEELREEL-----EKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELE 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 816 ndiAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEK 895
Cdd:COG4717 181 ---ELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAA 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 896 LLELEKKMETSYNQCQDL-------------------KAKYEKASSETKTKHEEILQNLQKM-----LADTEDKLKAAQE 951
Cdd:COG4717 258 LLALLGLGGSLLSLILTIagvlflvlgllallflllaREKASLGKEAEELQALPALEELEEEeleelLAALGLPPDLSPE 337
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 952 ANRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTK-------EKTETLASLEDTKQTNARLQNELDTLKENnlktVEE 1024
Cdd:COG4717 338 ELLELLDRIEELQELLREAEELEEELQLEELEQEIAAllaeagvEDEEELRAALEQAEEYQELKEELEELEEQ----LEE 413
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1025 LNKSKELLSVENQKmEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEvTSHQKLEEERSVLNNQLLEMKKR 1104
Cdd:COG4717 414 LLGELEELLEALDE-EELEEELEELEEELEELEEELEELREELAELEAELEQLEED-GELAELLQELEELKAELRELAEE 491
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
353-849 |
3.01e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 55.31 E-value: 3.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 353 QEALKEKQQhIEQLLAERDLeRAEVAKATSHVGEIEQELALARDGHDQHVLEL-EAKMDQLRTMVEAADREKVELLNQLE 431
Cdd:COG4913 242 EALEDAREQ-IELLEPIREL-AERYAAARERLAELEYLRAALRLWFAQRRLELlEAELEELRAELARLEAELERLEARLD 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 432 EEKRKVEDLqfrveEESITKGDLEQKSPIsedpenvatvseKSRIMELEKDLALRAQEVAELRRRLES--SKPPGDVDMS 509
Cdd:COG4913 320 ALREELDEL-----EAQIRGNGGDRLEQL------------EREIERLERELEERERRRARLEALLAAlgLPLPASAEEF 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 510 LSLLQEISALQEKLEAIHTDHQGEMTSLKehfgAREEAFQKEIKALhtateklSKENESLRSkldhaNKEN--SDVIALw 587
Cdd:COG4913 383 AALRAEAAALLEALEEELEALEEALAEAE----AALRDLRRELREL-------EAEIASLER-----RKSNipARLLAL- 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 588 KSKLETAIASHQQAM----EELKVSFSKGIGTDSAE----------------FAELKTQIERL----RLDYQHEIESLQS 643
Cdd:COG4913 446 RDALAEALGLDEAELpfvgELIEVRPEEERWRGAIErvlggfaltllvppehYAAALRWVNRLhlrgRLVYERVRTGLPD 525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 644 KQDSERSAHakemeTMQAKLmkIIKEKEDSlEAVKARLDSAEDQHLVEMEDTLNKLQEA-----EIKANSITKELQEKEL 718
Cdd:COG4913 526 PERPRLDPD-----SLAGKL--DFKPHPFR-AWLEAELGRRFDYVCVDSPEELRRHPRAitragQVKGNGTRHEKDDRRR 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 719 VLTGLQdsLNQVNQVK-ETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLH-------QKEEQFNVLS-----SELEK 785
Cdd:COG4913 598 IRSRYV--LGFDNRAKlAALEAELAELEEELAEAEERLEALEAELDALQERREalqrlaeYSWDEIDVASaereiAELEA 675
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907165175 786 LRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEEL 849
Cdd:COG4913 676 ELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAA 739
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
478-1143 |
3.98e-07 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 54.83 E-value: 3.98e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 478 ELEKDLALRAQEVAELRRRLESSKPPGDVDMSLSLlqEISALQEKLEA-------IHTDHQGEMTSLKEHFGAREEAfQK 550
Cdd:pfam10174 40 ELKKERALRKEEAARISVLKEQYRVTQEENQHLQL--TIQALQDELRAqrdlnqlLQQDFTTSPVDGEDKFSTPELT-EE 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 551 EIKALHTATEKLSKENESLRSKLDHANKEnsdvIALWKSKLETAIASHQQAMEELKvsfSKGIGTDSAEF---------- 620
Cdd:pfam10174 117 NFRRLQSEHERQAKELFLLRKTLEEMELR----IETQKQTLGARDESIKKLLEMLQ---SKGLPKKSGEEdwertrriae 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 621 -----AELKTQIERLRLDYQHEIESLQSK-QDSERSAHAKEMET-MQAKLMKI------IKEKEDSLEAVKARLDSAEDQ 687
Cdd:pfam10174 190 aemqlGHLEVLLDQKEKENIHLREELHRRnQLQPDPAKTKALQTvIEMKDTKIsslernIRDLEDEVQMLKTNGLLHTED 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 688 H---LVEMEDTLNKLQEAEIKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQD 764
Cdd:pfam10174 270 ReeeIKQMEVYKSHSKFMKNKIDQLKQELSKKESELLALQTKLETLTNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDA 349
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 765 TVNKLHQKEEQFNVLSSELEKLREnltDMEAKFKEKDDREDQLVKAKEK---LENDIAEIMKMSGDNSSQLTKmndelrL 841
Cdd:pfam10174 350 LRLRLEEKESFLNKKTKQLQDLTE---EKSTLAGEIRDLKDMLDVKERKinvLQKKIENLQEQLRDKDKQLAG------L 420
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 842 KERsVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARkheeekkeleeKLLELEKKMETSYNQCQDLKAKYEKAS 921
Cdd:pfam10174 421 KER-VKSLQTDSSNTDTALTTLEEALSEKERIIERLKEQRER-----------EDRERLEELESLKKENKDLKEKVSALQ 488
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 922 SETKTKHEEIL------QNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAkaaQTAEDAMQIMEQMTKEKTETLA 995
Cdd:pfam10174 489 PELTEKESSLIdlkehaSSLASSGLKKDSKLKSLEIAVEQKKEECSKLENQLKKA---HNAEEAVRTNPEINDRIRLLEQ 565
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 996 SLEDTKQTNARLQNELDTLKENnLKTVEELNKSKEllsvenQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELg 1075
Cdd:pfam10174 566 EVARYKEESGKAQAEVERLLGI-LREVENEKNDKD------KKIAELESLTLRQMKEQNKKVANIKHGQQEMKKKGAQL- 637
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907165175 1076 rtrDEVTSHQKLEEERSVLNNQLLEMKKRESEFRKDADEEKASLqksiSLTSALLTEKDAELEKLRNE 1143
Cdd:pfam10174 638 ---LEEARRREDNLADNSQQLQLEELMGALEKTRQELDATKARL----SSTQQSLAEKDGHLTNLRAE 698
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
723-978 |
5.59e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.61 E-value: 5.59e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 723 LQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDD 802
Cdd:COG4942 25 AEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 803 REDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMndeLRLKERSVEELQLKLTKanenasfLQKSIGEVTLKAEQSQQQAA 882
Cdd:COG4942 105 ELAELLRALYRLGRQPPLALLLSPEDFLDAVRR---LQYLKYLAPARREQAEE-------LRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 883 RKheeekkeleekllelekkmETSYNQCQDLKAKYEKAssetKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEE 962
Cdd:COG4942 175 EL-------------------EALLAELEEERAALEAL----KAERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
250
....*....|....*.
gi 1907165175 963 LKTQADKAKAAQTAED 978
Cdd:COG4942 232 LEAEAAAAAERTPAAG 247
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
814-1202 |
7.10e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.92 E-value: 7.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 814 LENDIAEIMKMSGdnsSQLTKMNDELRlkerSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELE 893
Cdd:TIGR02169 140 LQGDVTDFISMSP---VERRKIIDEIA----GVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAER 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 894 ekllelekkmetsYNQCQDLKAKYE-KASSETKTKHEEILQNLQKMLADTE---DKLKAAQEANRDLMQDMEELKTQADK 969
Cdd:TIGR02169 213 -------------YQALLKEKREYEgYELLKEKEALERQKEAIERQLASLEeelEKLTEEISELEKRLEEIEQLLEELNK 279
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 970 AKAAQTAEDAMQIMEQMTkektETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETL 1049
Cdd:TIGR02169 280 KIKDLGEEEQLRVKEKIG----ELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKL 355
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1050 KQAAAQKSQQLSAL----QEENVKLAEELGRTRDEVTSHQKLEEERSVLN---NQLLEMKKRESEFRKDADEEKASLQKS 1122
Cdd:TIGR02169 356 TEEYAELKEELEDLraelEEVDKEFAETRDELKDYREKLEKLKREINELKrelDRLQEELQRLSEELADLNAAIAGIEAK 435
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1123 ISLTSALLTEKDAELEKLRNEVTVLRGENATAKSLHSVVQTlESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEE 1202
Cdd:TIGR02169 436 INELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKE-EYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEE 514
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1003-1220 |
7.77e-07 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 53.76 E-value: 7.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1003 TNARLQNELDTLKENNLKTVEE------LNKSKELLsvenQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELG- 1075
Cdd:PRK11281 37 TEADVQAQLDALNKQKLLEAEDklvqqdLEQTLALL----DKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDe 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1076 --RTRDEVTSHQKLEEERSVLNNQLLEMKKRESEfrkdADEEKASLQKSISLTSALLTEKDAELEKLRNEvtvLRGENAT 1153
Cdd:PRK11281 113 etRETLSTLSLRQLESRLAQTLDQLQNAQNDLAE----YNSQLVSLQTQPERAQAALYANSQRLQQIRNL---LKGGKVG 185
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907165175 1154 AKSLHSvvqtleSDKVKLELKVKNLELQLKENKRQLSSSSGNTD-AQAEED---ERAQESQQMIDFLNSVI 1220
Cdd:PRK11281 186 GKALRP------SQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDlLQKQRDyltARIQRLEHQLQLLQEAI 250
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
554-1178 |
8.43e-07 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 53.90 E-value: 8.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 554 ALHTATEKLSKENESLRSKldHANKENSDVIalwkSKLETAIASHQQAMEELKV-SFSKGIGTDSAEFAE----LKTQIE 628
Cdd:TIGR01612 1048 AIHTSIYNIIDEIEKEIGK--NIELLNKEIL----EEAEINITNFNEIKEKLKHyNFDDFGKEENIKYADeinkIKDDIK 1121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 629 RLRLDYQHEIESLQS-KQDSERsaHAKEMETMQAKLMKI---------IKEKEDSLEAVKARLDSAEDQHlVEMEDTLNK 698
Cdd:TIGR01612 1122 NLDQKIDHHIKALEEiKKKSEN--YIDEIKAQINDLEDVadkaisnddPEEIEKKIENIVTKIDKKKNIY-DEIKKLLNE 1198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 699 LQEAEIKANSitkeLQEKELVLTGLQDSLN-----QVNQVKETLE----------KELQTLKEKFASTSEEAVSAQT--R 761
Cdd:TIGR01612 1199 IAEIEKDKTS----LEEVKGINLSYGKNLGklfleKIDEEKKKSEhmikameayiEDLDEIKEKSPEIENEMGIEMDikA 1274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 762 MQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGD---------NSSQL 832
Cdd:TIGR01612 1275 EMETFNISHDDDKDHHIISKKHDENISDIREKSLKIIEDFSEESDINDIKKELQKNLLDAQKHNSDinlylneiaNIYNI 1354
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 833 TKMN------DELRLKERSVEELQLKLTKANENASFLQKSIGE-VTLKAEQSQQQAA--RKHEEEKKELEEKLLELEKKM 903
Cdd:TIGR01612 1355 LKLNkikkiiDEVKEYTKEIEENNKNIKDELDKSEKLIKKIKDdINLEECKSKIESTldDKDIDECIKKIKELKNHILSE 1434
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 904 ETSYNqcqdlkaKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQE-ANRDLMQDMEELKTQADKAKAAQTAEDA--- 979
Cdd:TIGR01612 1435 ESNID-------TYFKNADENNENVLLLFKNIEMADNKSQHILKIKKDnATNDHDFNINELKEHIDKSKGCKDEADKnak 1507
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 980 -----MQIMEQMTKEKTETLasledTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVE----NQKMEEFKKEIETLK 1050
Cdd:TIGR01612 1508 aieknKELFEQYKKDVTELL-----NKYSALAIKNKFAKTKKDSEIIIKEIKDAHKKFILEaeksEQKIKEIKKEKFRIE 1582
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1051 QAAAQKSQ--------QLSALQEEN--VKLAEELGRTRDEVTSHQKLEEERSVL--NNQLLEMKKRESEFR--KDADEEK 1116
Cdd:TIGR01612 1583 DDAAKNDKsnkaaidiQLSLENFENkfLKISDIKKKINDCLKETESIEKKISSFsiDSQDTELKENGDNLNslQEFLESL 1662
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907165175 1117 ASLQKSISLTSALLTEKDAELEKLRN---------EVTVLRGENATAKSLHsvvQTLESDKVKLELKVKNL 1178
Cdd:TIGR01612 1663 KDQKKNIEDKKKELDELDSEIEKIEIdvdqhkknyEIGIIEKIKEIAIANK---EEIESIKELIEPTIENL 1730
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
351-959 |
9.93e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.38 E-value: 9.93e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 351 ALQEALKEKQQHIEqllAERDLERAEVAKATSHVGEIEQELALardghdqhvleLEAKMDQLRTMVEAADREKVELLNQL 430
Cdd:COG4913 253 LLEPIRELAERYAA---ARERLAELEYLRAALRLWFAQRRLEL-----------LEAELEELRAELARLEAELERLEARL 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 431 EEEKRKVEDLqfrveEESITKGDLEQKSPIsedpenvatvseKSRIMELEKDLALRAQEVAELRRRLES--SKPPGDVDM 508
Cdd:COG4913 319 DALREELDEL-----EAQIRGNGGDRLEQL------------EREIERLERELEERERRRARLEALLAAlgLPLPASAEE 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 509 SLSLLQEISALQEKLEAIHTDHQGEMTSLKehfgAREEAFQKEIKAlhtatekLSKENESLRSkldhaNKEN--SDVIAL 586
Cdd:COG4913 382 FAALRAEAAALLEALEEELEALEEALAEAE----AALRDLRRELRE-------LEAEIASLER-----RKSNipARLLAL 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 587 wKSKLETAIASHQQAM----EELKVSFSKGIGTDSAE----------------FAELKTQIERL----RLDYQHEIESLQ 642
Cdd:COG4913 446 -RDALAEALGLDEAELpfvgELIEVRPEEERWRGAIErvlggfaltllvppehYAAALRWVNRLhlrgRLVYERVRTGLP 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 643 SKQDSERSAHakemeTMQAKLmkIIKEKEdSLEAVKARLDSAEDQHLVEMEDTLNKLQEA-----EIKANSITKELQEKE 717
Cdd:COG4913 525 DPERPRLDPD-----SLAGKL--DFKPHP-FRAWLEAELGRRFDYVCVDSPEELRRHPRAitragQVKGNGTRHEKDDRR 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 718 LVLTGLQdsLNQVNQVK-ETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHqkeeqfnvLSSELEKLRENLTDMEAK 796
Cdd:COG4913 597 RIRSRYV--LGFDNRAKlAALEAELAELEEELAEAEERLEALEAELDALQERRE--------ALQRLAEYSWDEIDVASA 666
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 797 FKEKDDREDQLvkakEKLENDiaeimkmsgdnSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEvtlkAEQ 876
Cdd:COG4913 667 EREIAELEAEL----ERLDAS-----------SDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQ----AEE 727
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 877 SQQQAARKHEEEKKELEEKLLelekkmetsynqcQDLKAKYEKASSETKTKheEILQNLQKMLADTEDKLKAAQEANRDL 956
Cdd:COG4913 728 ELDELQDRLEAAEDLARLELR-------------ALLEERFAAALGDAVER--ELRENLEERIDALRARLNRAEEELERA 792
|
...
gi 1907165175 957 MQD 959
Cdd:COG4913 793 MRA 795
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
626-1150 |
1.29e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 53.26 E-value: 1.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 626 QIERLRLdyQHEIESLQSKQDSERSAHAK---EMETMQAKlMKIIKEKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEA 702
Cdd:pfam01576 95 QNEKKKM--QQHIQDLEEQLDEEEAARQKlqlEKVTTEAK-IKKLEEDILLLEDQNSKLSKERKLLEERISEFTSNLAEE 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 703 EIKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQfnvLSSE 782
Cdd:pfam01576 172 EEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEE---LQAA 248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 783 LEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIA---EIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANEN 859
Cdd:pfam01576 249 LARLEEETAQKNNALKKIRELEAQISELQEDLESERAarnKAEKQRRDLGEELEALKTELEDTLDTTAAQQELRSKREQE 328
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 860 ASFLQKSIGEVTLKAEQSQQQAARKHeeekkeleeklLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEI---LQNLQ 936
Cdd:pfam01576 329 VTELKKALEEETRSHEAQLQEMRQKH-----------TQALEELTEQLEQAKRNKANLEKAKQALESENAELqaeLRTLQ 397
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 937 KMLADTEDKLKAAQeanrdlmQDMEELKTQADKAKAAQTaeDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKe 1016
Cdd:pfam01576 398 QAKQDSEHKRKKLE-------GQLQELQARLSESERQRA--ELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLE- 467
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1017 nnlktvEELNKSKELLSVENqkmeefkkeietlkQAAAQKSQQLSALQEENVKLAEELgrtRDEVTSHQKLEEERSVLNN 1096
Cdd:pfam01576 468 ------SQLQDTQELLQEET--------------RQKLNLSTRLRQLEDERNSLQEQL---EEEEEAKRNVERQLSTLQA 524
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 1907165175 1097 QLLEMKKRESEFR---KDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGE 1150
Cdd:pfam01576 525 QLSDMKKKLEEDAgtlEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQE 581
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
754-1239 |
1.80e-06 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 52.44 E-value: 1.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 754 EAVSAQTRMQDTVNKLHQKEEQFNVLSSELEK----LRENLTDMEAKFKEKDDRedqlVKAKEKLENDIAEIMKMSGDNS 829
Cdd:pfam05557 3 ELIESKARLSQLQNEKKQMELEHKRARIELEKkasaLKRQLDRESDRNQELQKR----IRLLEKREAEAEEALREQAELN 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 830 SQLTKMNDELRLKERsveELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKheeekkeleekllelEKKMETSYNQ 909
Cdd:pfam05557 79 RLKKKYLEALNKKLN---EKESQLADAREVISCLKNELSELRRQIQRAELELQST---------------NSELEELQER 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 910 CQDLKAKYEKASsetktKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQadKAKAAQTAEdamqiMEQMTKE 989
Cdd:pfam05557 141 LDLLKAKASEAE-----QLRQNLEKQQSSLAEAEQRIKELEFEIQSQEQDSEIVKNS--KSELARIPE-----LEKELER 208
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 990 KTETLASLEDTKQTNARLQNELDTLKeNNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQK-------SQQLSA 1062
Cdd:pfam05557 209 LREHNKHLNENIENKLLLKEEVEDLK-RKLEREEKYREEAATLELEKEKLEQELQSWVKLAQDTGLNlrspedlSRRIEQ 287
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1063 LQEENVKLAEELG----RTRDEVTSHQKLEEERSVLNNQLLEMKKResefRKDADEEKASLQKSISLTSallTEKDAELE 1138
Cdd:pfam05557 288 LQQREIVLKEENSsltsSARQLEKARRELEQELAQYLKKIEDLNKK----LKRHKALVRRLQRRVLLLT---KERDGYRA 360
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1139 KLRNEVTVLRGENATAKSLHSVvqtLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDE----RAQESQQMID 1214
Cdd:pfam05557 361 ILESYDKELTMSNYSPQLLERI---EEAEDMTQKMQAHNEEMEAQLSVAEEELGGYKQQAQTLERElqalRQQESLADPS 437
|
490 500
....*....|....*....|....*
gi 1907165175 1215 FLNSVIVDLQRKNQDLKMKVEMMSE 1239
Cdd:pfam05557 438 YSKEEVDSLRRKLETLELERQRLRE 462
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
695-1211 |
2.00e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 52.66 E-value: 2.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 695 TLNKLQEAEIKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTlkekfastseeavsAQTRMQDTVNKLHQKEE 774
Cdd:TIGR00618 185 EFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLRE--------------ALQQTQQSHAYLTQKRE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 775 QFNvlssELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLEND-----IAEIMKMSGDNSSQLTKMNDELRLKERSVEEL 849
Cdd:TIGR00618 251 AQE----EQLKKQQLLKQLRARIEELRAQEAVLEETQERINRArkaapLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKL 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 850 QLKLTKANENASFLQKSigevtlkaEQSQQQAARKHeeekkeleeklleleKKMETSYNQCQDLKAKYEKASSET---KT 926
Cdd:TIGR00618 327 LMKRAAHVKQQSSIEEQ--------RRLLQTLHSQE---------------IHIRDAHEVATSIREISCQQHTLTqhiHT 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 927 KHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAR 1006
Cdd:TIGR00618 384 LQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQE 463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1007 LQNELDTLKEnNLKTVEEL-NKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVkLAEELGRTRDEVTSHQ 1085
Cdd:TIGR00618 464 SAQSLKEREQ-QLQTKEQIhLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGP-LTRRMQRGEQTYAQLE 541
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1086 KLEEErsvLNNQLLEMKKResefRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGE-NATAKSLHSVVQTL 1164
Cdd:TIGR00618 542 TSEED---VYHQLTSERKQ----RASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLtEKLSEAEDMLACEQ 614
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 1907165175 1165 ESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERAQESQQ 1211
Cdd:TIGR00618 615 HALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVR 661
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
354-823 |
2.45e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.08 E-value: 2.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 354 EALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGHDQHvlELEAKMDQLRTMVEAADREKVELLNQLEEE 433
Cdd:COG4717 81 KEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLL--PLYQELEALEAELAELPERLEELEERLEEL 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 434 KRKVEDLQFRVEEESITKGDLEQ---------KSPISEDPENVATVSEksRIMELEKDLALRAQEVAELRRRLESSKPPG 504
Cdd:COG4717 159 RELEEELEELEAELAELQEELEElleqlslatEEELQDLAEELEELQQ--RLAELEEELEEAQEELEELEEELEQLENEL 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 505 DVDMSLSLLQEISALQEKLEAIHTdHQGEMTSLKEHFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHANkensdvi 584
Cdd:COG4717 237 EAAALEERLKEARLLLLIAAALLA-LLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQ------- 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 585 alwksKLETAIASHQQAMEELKVSFSKGIGTDSAEFAELKTQIERLRlDYQHEIESLQSkqdsersahakemetmQAKLM 664
Cdd:COG4717 309 -----ALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQ-ELLREAEELEE----------------ELQLE 366
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 665 KIIKEKEDSLEAVKArlDSAEDqhLVEMEDTLNKLQEAEIKANSITKELQEKELVLTGLQDSLNqvnqvKETLEKELQTL 744
Cdd:COG4717 367 ELEQEIAALLAEAGV--EDEEE--LRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALD-----EEELEEELEEL 437
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907165175 745 KEKFASTSEEAVSAQTRMQDTVNKLHQKEEqfnvlSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMK 823
Cdd:COG4717 438 EEELEELEEELEELREELAELEAELEQLEE-----DGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYRE 511
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
621-882 |
3.62e-06 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 51.84 E-value: 3.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 621 AELKTQIERLRLDYQHEIESLQSKQDsersahakeMETMQAKLMKIIKEKEDsLEAVKARLDSAeDQHLVEMEDTLNKLQ 700
Cdd:PRK11281 39 ADVQAQLDALNKQKLLEAEDKLVQQD---------LEQTLALLDKIDRQKEE-TEQLKQQLAQA-PAKLRQAQAELEALK 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 701 EaeiKANSITKELQEKeLVLTGLQDSLNQVNQvketlekELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLS 780
Cdd:PRK11281 108 D---DNDEETRETLST-LSLRQLESRLAQTLD-------QLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIR 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 781 SELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLEndiaeimKMSGDNSSQLTkmndELRLKERsvEELQLKLTKANENA 860
Cdd:PRK11281 177 NLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQ-------RKSLEGNTQLQ----DLLQKQR--DYLTARIQRLEHQL 243
|
250 260
....*....|....*....|..
gi 1907165175 861 SFLQKSIGEVTLkaEQSQQQAA 882
Cdd:PRK11281 244 QLLQEAINSKRL--TLSEKTVQ 263
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
633-1107 |
3.96e-06 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 51.62 E-value: 3.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 633 DYQHEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKaRLDSAEDQHLV-----EMEDTLNKLQEAEIKAN 707
Cdd:COG5022 814 SYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKK-RFSLLKKETIYlqsaqRVELAERQLQELKIDVK 892
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 708 SITK------ELQEKELVLT-GLQDSLNQVNQVKETLEKELQTLKEKfaSTSEEAVSAQTRMQDTVNKLHQKEeqfnvls 780
Cdd:COG5022 893 SISSlklvnlELESEIIELKkSLSSDLIENLEFKTELIARLKKLLNN--IDLEEGPSIEYVKLPELNKLHEVE------- 963
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 781 SELEKLRENLTDMeakFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSqLTKMNDELRLKERSVEELQLKLTKANENA 860
Cdd:COG5022 964 SKLKETSEEYEDL---LKKSTILVREGNKANSELKNFKKELAELSKQYGA-LQESTKQLKELPVEVAELQSASKIISSES 1039
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 861 SFL------QKSIGEVTLKAEQSQQQAarKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQN 934
Cdd:COG5022 1040 TELsilkplQKLKGLLLLENNQLQARY--KALKLRRENSLLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKPANVLQF 1117
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 935 LqkmladtedklkAAQEANRDLMQDMEELKTQadkakAAQTAEDAMQIME--QMTKEKTETLASLEDTKQTNARLQNELD 1012
Cdd:COG5022 1118 I------------VAQMIKLNLLQEISKFLSQ-----LVNTLEPVFQKLSvlQLELDGLFWEANLEALPSPPPFAALSEK 1180
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1013 TLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETL-KQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKL--EE 1089
Cdd:COG5022 1181 RLYQSALYDEKSKLSSSEVNDLKNELIALFSKIFSGWpRGDKLKKLISEGWVPTEYSTSLKGFNNLNKKFDTPASMsnEK 1260
|
490 500
....*....|....*....|
gi 1907165175 1090 ERSVLN--NQLLEMKKRESE 1107
Cdd:COG5022 1261 LLSLLNsiDNLLSSYKLEEE 1280
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
735-1165 |
4.15e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 51.31 E-value: 4.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 735 ETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKL 814
Cdd:COG4717 49 ERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLL 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 815 ENDIaeimkmsgdnssQLTKMNDELRLKERSVEELQLKLTKANEnasfLQKSIGEVTLKAEQSQQQAARKHEEEKKELEE 894
Cdd:COG4717 129 PLYQ------------ELEALEAELAELPERLEELEERLEELRE----LEEELEELEAELAELQEELEELLEQLSLATEE 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 895 KLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKML-ADTEDKLKAAQEANRD-------LMQDMEELKTQ 966
Cdd:COG4717 193 ELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEaAALEERLKEARLLLLIaaallalLGLGGSLLSLI 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 967 ADKAKAAQTAEDAMQIMEQMT-KEKTETLASLEDTKQTNAR-------LQNELDTLKENNLKTVEELNKSKELLSVENQK 1038
Cdd:COG4717 273 LTIAGVLFLVLGLLALLFLLLaREKASLGKEAEELQALPALeeleeeeLEELLAALGLPPDLSPEELLELLDRIEELQEL 352
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1039 MEEFKKEIETLKQAAAQKSQQlSALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKRESEFRKDADEEkaS 1118
Cdd:COG4717 353 LREAEELEEELQLEELEQEIA-ALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEE--E 429
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 1907165175 1119 LQKSISLTSALLTEKDAELEKLRNEVTVLRGENATAKSLHSVVQTLE 1165
Cdd:COG4717 430 LEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELAELLQ 476
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
560-1208 |
4.69e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 51.33 E-value: 4.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 560 EKLSKENESLRSKLDHANKENSDVIALWKSKLETAIASHQQAMEELKVSFSKgigtdSAEFAELKTQIERLRLDYQHEIE 639
Cdd:pfam01576 200 EKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALAR-----LEEETAQKNNALKKIRELEAQIS 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 640 SLQSKQDSERSAHAKEMET---MQAKLMKIIKEKEDSLE--AVKARLDSAEDQHLVEMEDTLNklQEAEIKANSITKELQ 714
Cdd:pfam01576 275 ELQEDLESERAARNKAEKQrrdLGEELEALKTELEDTLDttAAQQELRSKREQEVTELKKALE--EETRSHEAQLQEMRQ 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 715 EKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQ---FNVLSSELEKLRENLT 791
Cdd:pfam01576 353 KHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQlqeLQARLSESERQRAELA 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 792 DMEAKFKEKDDREDQLVKAKE----KLENDIAEImkmsgdnSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSI 867
Cdd:pfam01576 433 EKLSKLQSELESVSSLLNEAEgkniKLSKDVSSL-------ESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQL 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 868 GEvtlkaEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKM------LAD 941
Cdd:pfam01576 506 EE-----EEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLektknrLQQ 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 942 TEDKLKAAQEANRDLMQDMEELKTQAD------KAKAAQTAEDAMQIMEQ----------MTKEKTETLASLEDTKQTNA 1005
Cdd:pfam01576 581 ELDDLLVDLDHQRQLVSNLEKKQKKFDqmlaeeKAISARYAEERDRAEAEareketralsLARALEEALEAKEELERTNK 660
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1006 RLQNELDTL---KENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKS-------QQLSALQEENVKLAEELG 1075
Cdd:pfam01576 661 QLRAEMEDLvssKDDVGKNVHELERSKRALEQQVEEMKTQLEELEDELQATEDAKlrlevnmQALKAQFERDLQARDEQG 740
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1076 RTRDEVTSHQ------KLEEERSVLNNQLLEMKKRESEFrKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVtvlrg 1149
Cdd:pfam01576 741 EEKRRQLVKQvreleaELEDERKQRAQAVAAKKKLELDL-KELEAQIDAANKGREEAVKQLKKLQAQMKDLQREL----- 814
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1150 ENATAKSLHSVVQTLESDKvklelKVKNLELQLKENKRQLSSSS-GNTDAQAEEDERAQE 1208
Cdd:pfam01576 815 EEARASRDEILAQSKESEK-----KLKNLEAELLQLQEDLAASErARRQAQQERDELADE 869
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
352-1189 |
5.05e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 51.20 E-value: 5.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 352 LQEALKEKQQHIEQLLAERDlERAEVAKATSHVGEIEQELALARDGHDQHVLELEAKMDQLRTMVEAADREKVELLNQLE 431
Cdd:TIGR00606 211 YLKQYKEKACEIRDQITSKE-AQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 432 EEKRKVedlqFRVEEESITKGDLEQKSPISEDPENVATVSEKsrIMELEKDLALRAQEVAELRRRLESSKPPGDVdmsls 511
Cdd:TIGR00606 290 LKMEKV----FQGTDEQLNDLYHNHQRTVREKERELVDCQRE--LEKLNKERRLLNQEKTELLVEQGRLQLQADR----- 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 512 llqeisaLQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEIKALHTatekLSKENESLRSKLdhankensdvIALWKSKL 591
Cdd:TIGR00606 359 -------HQEHIRARDSLIQSLATRLELDGFERGPFSERQIKNFHT----LVIERQEDEAKT----------AAQLCADL 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 592 ETAIASHQQAMEELKVSFSKGIGTDSAEFAELKTQIERLRldyqHEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKE 671
Cdd:TIGR00606 418 QSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELK----FVIKELQQLEGSSDRILELDQELRKAERELSKAEKN 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 672 DSLEAVKARLDSAEDQHLvEMEDTLNKLQEAEIKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKEL---------- 741
Cdd:TIGR00606 494 SLTETLKKEVKSLQNEKA-DLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELtsllgyfpnk 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 742 QTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKE---KDDREDQLVKAKEKLENDI 818
Cdd:TIGR00606 573 KQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDvcgSQDEESDLERLKEEIEKSS 652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 819 AEIMKMSG-------------DNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKH 885
Cdd:TIGR00606 653 KQRAMLAGatavysqfitqltDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLA 732
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 886 EEEKKELEEKLLELEKKMETSYN---QCQDLKAKYEKASSETKTKHEE------------ILQNLQKMLADTEDKLkaAQ 950
Cdd:TIGR00606 733 PGRQSIIDLKEKEIPELRNKLQKvnrDIQRLKNDIEEQETLLGTIMPEeesakvcltdvtIMERFQMELKDVERKI--AQ 810
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 951 EANRDLMQDMEELKTQADKAKaaqtaEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKE 1030
Cdd:TIGR00606 811 QAAKLQGSDLDRTVQQVNQEK-----QEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQ 885
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1031 LLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQ-KLEEERSVLNNQLLEMKKRESEFR 1109
Cdd:TIGR00606 886 FEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQdKVNDIKEKVKNIHGYMKDIENKIQ 965
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1110 KDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGENATAKSLHSVVQTlESDKVKLELKVKNLELQLKENKRQL 1189
Cdd:TIGR00606 966 DGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQD-NLTLRKRENELKEVEEELKQHLKEM 1044
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
546-762 |
7.67e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.76 E-value: 7.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 546 EAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIALWKsKLETAIASHQQAMEELKvsfskgigtdsAEFAELKT 625
Cdd:COG4942 30 EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIR-ALEQELAALEAELAELE-----------KEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 626 QIERLRLDYQHEIESLQ--SKQD-------SERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQHLVEMEDTL 696
Cdd:COG4942 98 ELEAQKEELAELLRALYrlGRQPplalllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907165175 697 NKLQEAEIKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRM 762
Cdd:COG4942 178 ALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
334-1047 |
8.84e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 50.11 E-value: 8.84e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 334 LLTETSSRYARKISGTTALQEALKEKQQHIEQLLaERDLERAEVAKATSHVGEIEQELALARDGHDQHVLELEAKMDqlr 413
Cdd:pfam05483 159 LLKETCARSAEKTKKYEYEREETRQVYMDLNNNI-EKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKE--- 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 414 tmVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEQKSPISEdpENVATVSEKSRIMELE-KDLALRAQEVAE 492
Cdd:pfam05483 235 --INDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQD--ENLKELIEKKDHLTKElEDIKMSLQRSMS 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 493 LRRRLESSKPPGDVDMsLSLLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEafqkeikALHTATEKLSKENESLRSK 572
Cdd:pfam05483 311 TQKALEEDLQIATKTI-CQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEE-------LLRTEQQRLEKNEDQLKII 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 573 LDHANKENSDVIALWKSKletaiASHQQAMEELKvsfsKGIGTDSAEFAElKTQIERLrldyQHEIESLQSKQDSERSAH 652
Cdd:pfam05483 383 TMELQKKSSELEEMTKFK-----NNKEVELEELK----KILAEDEKLLDE-KKQFEKI----AEELKGKEQELIFLLQAR 448
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 653 AKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQhlvemedtlnKLQEAEIKANSITKELQEKELVltglQDSLNQVNQ 732
Cdd:pfam05483 449 EKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKE----------KLKNIELTAHCDKLLLENKELT----QEASDMTLE 514
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 733 VKETLEKELQTLKEkfastseeavsaQTRMQDTVNKLHQKEEQfnvLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKE 812
Cdd:pfam05483 515 LKKHQEDIINCKKQ------------EERMLKQIENLEEKEMN---LRDELESVREEFIQKGDEVKCKLDKSEENARSIE 579
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 813 KLENDIAEIMKMSGDNSSQLTKmndELRLKERSVEELQlkltkaNENASFLQKSigevtlKAEQSQQQAarkheeekkeL 892
Cdd:pfam05483 580 YEVLKKEKQMKILENKCNNLKK---QIENKNKNIEELH------QENKALKKKG------SAENKQLNA----------Y 634
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 893 EEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKa 972
Cdd:pfam05483 635 EIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVALMEKHK- 713
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907165175 973 aqtaedamQIMEQMTKEKTETLASLEDTKQTNARLQNELDTlKENNLKTveELNKSKELLSVENQKMEEFKKEIE 1047
Cdd:pfam05483 714 --------HQYDKIIEERDSELGLYKNKEQEQSSAKAALEI-ELSNIKA--ELLSLKKQLEIEKEEKEKLKMEAK 777
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
402-1017 |
1.01e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 50.22 E-value: 1.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 402 VLELEAKMDQLRTMVEA--ADREKVELLNQLEEEK--RKVEDLQF--RVEEESITKGDLEQKSPISEDPEnVATVSEKSR 475
Cdd:pfam12128 188 MHSKEGKFRDVKSMIVAilEDDGVVPPKSRLNRQQveHWIRDIQAiaGIMKIRPEFTKLQQEFNTLESAE-LRLSHLHFG 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 476 IMELEKDLALRAQEVAELRRRLESSKPPGDVDMSLS---LLQEISAL-------QEKLEAIHTDH----QGEMTSLKEH- 540
Cdd:pfam12128 267 YKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKrdeLNGELSAAdaavakdRSELEALEDQHgaflDADIETAAADq 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 541 -----FGAREEAFQKEIKALHTATEKLSKENESLRSKLDhanKENSDVIALWKSKLE----------TAIASHQQAME-E 604
Cdd:pfam12128 347 eqlpsWQSELENLEERLKALTGKHQDVTAKYNRRRSKIK---EQNNRDIAGIKDKLAkireardrqlAVAEDDLQALEsE 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 605 LKVSFSKGIGTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAhaKEMETMQAKLMKIIKEKEDsLEAVKARLDSA 684
Cdd:pfam12128 424 LREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQLENFD--ERIERAREEQEAANAEVER-LQSELRQARKR 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 685 EDQHLVemedtlnKLQEAEIKANSITKELQEKELVLTGLQDSL-----NQVNQVKETLEK-------------------- 739
Cdd:pfam12128 501 RDQASE-------ALRQASRRLEERQSALDELELQLFPQAGTLlhflrKEAPDWEQSIGKvispellhrtdldpevwdgs 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 740 ------------ELQTLKEKFASTSEEAV-----SAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDD 802
Cdd:pfam12128 574 vggelnlygvklDLKRIDVPEWAASEEELrerldKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARL 653
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 803 REDQLVKAKE----KLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQ--LKLTKANENASFLQKSIG-------- 868
Cdd:pfam12128 654 DLRRLFDEKQsekdKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQkeQKREARTEKQAYWQVVEGaldaqlal 733
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 869 --------EVTLKAEQSQQQAARKHEEEKK----ELEEKLLELEKKMETSYNQCQDLKAK------------------YE 918
Cdd:pfam12128 734 lkaaiaarRSGAKAELKALETWYKRDLASLgvdpDVIAKLKREIRTLERKIERIAVRRQEvlryfdwyqetwlqrrprLA 813
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 919 KASSETKTKHEEILQNLQKMLADTEDKLKAAQ---EANRDLMQDMEELKTQAD--KAKAAQTAEDAMQimEQMTKEKTET 993
Cdd:pfam12128 814 TQLSNIERAISELQQQLARLIADTKLRRAKLEmerKASEKQQVRLSENLRGLRceMSKLATLKEDANS--EQAQGSIGER 891
|
730 740
....*....|....*....|....
gi 1907165175 994 LASLEDTKQTNARLQNELDTLKEN 1017
Cdd:pfam12128 892 LAQLEDLKLKRDYLSESVKKYVEH 915
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
598-1271 |
1.10e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 50.44 E-value: 1.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 598 HQQAMEELKVSFSKGIGTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEkedsleaV 677
Cdd:TIGR01612 669 YEDDIDALYNELSSIVKENAIDNTEDKAKLDDLKSKIDKEYDKIQNMETATVELHLSNIENKKNELLDIIVE-------I 741
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 678 KARLDSAEDQHLVE-MEDTLNKLQEAEIKANSITKELQEKELVLTGLQDSLNQVN-----------QVKETLEK------ 739
Cdd:TIGR01612 742 KKHIHGEINKDLNKiLEDFKNKEKELSNKINDYAKEKDELNKYKSKISEIKNHYNdqinidnikdeDAKQNYDKskeyik 821
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 740 --------------ELQTLKEKFASTSEEAVSAQTRMQDTVNKLHqkeEQFNVLSSEL--EKLRENLTDMEAKFKEKddr 803
Cdd:TIGR01612 822 tisikedeifkiinEMKFMKDDFLNKVDKFINFENNCKEKIDSEH---EQFAELTNKIkaEISDDKLNDYEKKFNDS--- 895
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 804 edqlvkakEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGevTLKAEQSQQQAAR 883
Cdd:TIGR01612 896 --------KSLINEINKSIEEEYQNINTLKKVDEYIKICENTKESIEKFHNKQNILKEILNKNID--TIKESNLIEKSYK 965
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 884 KHEEekkeleekllelekkmETSYNQCQDLKAKYEKAS-SETKTKHEEILQ---NLQKMLADTEDKLKAAQ-----EANR 954
Cdd:TIGR01612 966 DKFD----------------NTLIDKINELDKAFKDASlNDYEAKNNELIKyfnDLKANLGKNKENMLYHQfdekeKATN 1029
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 955 DLMQDMEELKTQADKAKAAqTAEDAMQIMEQMTKEKTETLASLE-------DTKQTN-------ARLQNELDTLKENNLK 1020
Cdd:TIGR01612 1030 DIEQKIEDANKNIPNIEIA-IHTSIYNIIDEIEKEIGKNIELLNkeileeaEINITNfneikekLKHYNFDDFGKEENIK 1108
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1021 TVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSalqeenvklaeelgrtrdevTSHQKLEE--ERSVLNNQL 1098
Cdd:TIGR01612 1109 YADEINKIKDDIKNLDQKIDHHIKALEEIKKKSENYIDEIK--------------------AQINDLEDvaDKAISNDDP 1168
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1099 LEMKKRESEFRKDADEEKASLQksisltsalltekdaELEKLRNEVTvlrgenatakslhsvvqTLESDKVKLElKVKNL 1178
Cdd:TIGR01612 1169 EEIEKKIENIVTKIDKKKNIYD---------------EIKKLLNEIA-----------------EIEKDKTSLE-EVKGI 1215
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1179 ELQLKENKrqlssssgNTDAQAEEDERAQESQQMIDFLNSVIVDLQR-KNQDLKMKVEMMSEAALNGNGEDLNSYDSDDQ 1257
Cdd:TIGR01612 1216 NLSYGKNL--------GKLFLEKIDEEKKKSEHMIKAMEAYIEDLDEiKEKSPEIENEMGIEMDIKAEMETFNISHDDDK 1287
|
730
....*....|....*.
gi 1907165175 1258 EKQ--SKKKPRLFCDI 1271
Cdd:TIGR01612 1288 DHHiiSKKHDENISDI 1303
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
545-818 |
1.30e-05 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 49.64 E-value: 1.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 545 EEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIALWKSKLETAIASHQQAMEELKVSFSKGIGTDSAEfaELK 624
Cdd:pfam05667 253 AEQLRSAALAGTEATSGASRSAQDLAELLSSFSGSSTTDTGLTKGSRFTHTEKLQFTNEAPAATSSPPTKVETEE--ELQ 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 625 TQIERLRLDYQHEIESLQSKQDsersAHAKEMETMQAKlmkiIKEKEDSLEAVKARLDSAEDQHLVeMEDTLNKLQEAE- 703
Cdd:pfam05667 331 QQREEELEELQEQLEDLESSIQ----ELEKEIKKLESS----IKQVEEELEELKEQNEELEKQYKV-KKKTLDLLPDAEe 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 704 --IKANSITKELQEKELVLTGlqdslnQVNQVKETLEKELQTLKEKfastseeavsAQTRMQDTVNKLhqkeeqfnvlsS 781
Cdd:pfam05667 402 niAKLQALVDASAQRLVELAG------QWEKHRVPLIEEYRALKEA----------KSNKEDESQRKL-----------E 454
|
250 260 270
....*....|....*....|....*....|....*..
gi 1907165175 782 ELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDI 818
Cdd:pfam05667 455 EIKELREKIKEVAEEAKQKEELYKQLVAEYERLPKDV 491
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
932-1149 |
1.44e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.53 E-value: 1.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 932 LQNLQKMLADTEDKLKAAQEAnRDLMQDMEELKTQADKA---KAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQ 1008
Cdd:COG4913 237 LERAHEALEDAREQIELLEPI-RELAERYAAARERLAELeylRAALRLWFAQRRLELLEAELEELRAELARLEAELERLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1009 NELDTLKEnnlkTVEELnkSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEenvkLAEELGrtrdevtshQKLE 1088
Cdd:COG4913 316 ARLDALRE----ELDEL--EAQIRGNGGDRLEQLEREIERLERELEERERRRARLEA----LLAALG---------LPLP 376
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907165175 1089 EERSvlnnQLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRG 1149
Cdd:COG4913 377 ASAE----EFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLER 433
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
386-820 |
1.98e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.00 E-value: 1.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 386 EIEQELALARDGHDQHvLELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESItkgdleqKSPISEDPE 465
Cdd:COG4717 75 ELEEELKEAEEKEEEY-AELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEAL-------EAELAELPE 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 466 NVATVSEK-SRIMELEKDLALRAQEVAELRRRLESSKppgdVDMSLSLLQEISALQEKLEAIHtdhqgemtslkehfgAR 544
Cdd:COG4717 147 RLEELEERlEELRELEEELEELEAELAELQEELEELL----EQLSLATEEELQDLAEELEELQ---------------QR 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 545 EEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIALWKSKLETAIASHQQAMEELKVSFSK---------GIGT 615
Cdd:COG4717 208 LAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTiagvlflvlGLLA 287
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 616 DSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQH----LVE 691
Cdd:COG4717 288 LLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEeelqLEE 367
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 692 MEDTLNKLQeAEIKANSItKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQtrmqdtvnkLHQ 771
Cdd:COG4717 368 LEQEIAALL-AEAGVEDE-EELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEE---------LEE 436
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|.
gi 1907165175 772 KEEQFNVLSSELEKLRENLTDMEAKFK--EKDDREDQLVKAKEKLENDIAE 820
Cdd:COG4717 437 LEEELEELEEELEELREELAELEAELEqlEEDGELAELLQELEELKAELRE 487
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
802-1016 |
2.30e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 2.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 802 DREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLK-AEQSQQQ 880
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEiAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 881 AARKHEEEKKELEEKLLELEKKMETSYNQCQDLKA----KYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDL 956
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAvrrlQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 957 MQDMEELKTQADKAKAAQTaedamQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKE 1016
Cdd:COG4942 180 LAELEEERAALEALKAERQ-----KLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
908-1264 |
2.33e-05 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 48.92 E-value: 2.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 908 NQCQDLKAKYEKASSETKTKHEEILQnLQKMLADTEDKLKAAQEANRdlmqdMEELKTQ-ADKAKAAQTAEDAMQIMEQM 986
Cdd:COG5022 831 KLRETEEVEFSLKAEVLIQKFGRSLK-AKKRFSLLKKETIYLQSAQR-----VELAERQlQELKIDVKSISSLKLVNLEL 904
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 987 TKEKTETLASLEDTKQTNARLQNELDT-LKENNLKTVEELNKSKELlsVENQKMEEFKKEIETLKQAAAQKS---QQLSA 1062
Cdd:COG5022 905 ESEIIELKKSLSSDLIENLEFKTELIArLKKLLNNIDLEEGPSIEY--VKLPELNKLHEVESKLKETSEEYEdllKKSTI 982
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1063 LQEENVKLAEELGRTRDEVTSHQKleeERSVLNNQLLEMKKRESE---------FRKDADEEKASLQKSISLTSALLtek 1133
Cdd:COG5022 983 LVREGNKANSELKNFKKELAELSK---QYGALQESTKQLKELPVEvaelqsaskIISSESTELSILKPLQKLKGLLL--- 1056
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1134 dAELEKLRNEVTVLRGENATAKSLHSVVQTLESDKVKL-ELKVKNLELqlkeNKRQLSSSSGNTDAQAEEDERAQESQQM 1212
Cdd:COG5022 1057 -LENNQLQARYKALKLRRENSLLDDKQLYQLESTENLLkTINVKDLEV----TNRNLVKPANVLQFIVAQMIKLNLLQEI 1131
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 1907165175 1213 IDFLNSVIVDLQRKNQDLKMKVEMMSEAALNGNGEDLNSYDSDDQEKQSKKK 1264
Cdd:COG5022 1132 SKFLSQLVNTLEPVFQKLSVLQLELDGLFWEANLEALPSPPPFAALSEKRLY 1183
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
914-1264 |
2.38e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.98 E-value: 2.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 914 KAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKE---K 990
Cdd:PTZ00121 1110 KAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEevrK 1189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 991 TETLASLEDTKQTNARLQNEldtlkenNLKTVEELNKSKELLSVEN-QKMEEFKKEIETLKQAAAQKSQqlsalqEENVK 1069
Cdd:PTZ00121 1190 AEELRKAEDARKAEAARKAE-------EERKAEEARKAEDAKKAEAvKKAEEAKKDAEEAKKAEEERNN------EEIRK 1256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1070 LAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRG 1149
Cdd:PTZ00121 1257 FEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKK 1336
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1150 ENATAKSLHSVVQTLESDKVKlelKVKNLELQLKENKRQLSSSSGNTDA---QAEEDERAQESQQMIDFLNSVIVDLQRK 1226
Cdd:PTZ00121 1337 KAEEAKKAAEAAKAEAEAAAD---EAEAAEEKAEAAEKKKEEAKKKADAakkKAEEKKKADEAKKKAEEDKKKADELKKA 1413
|
330 340 350
....*....|....*....|....*....|....*...
gi 1907165175 1227 NQDLKMKVEMMSEAALNGNGEDLNSYDSDDQEKQSKKK 1264
Cdd:PTZ00121 1414 AAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKK 1451
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
351-579 |
2.64e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 2.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 351 ALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARdghdQHVLELEAKMDQLRTMVEAADREKVELLNQL 430
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALA----RRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 431 EEEKRKVEDL---QFRVEEESITKGDLEQKSPisedpenvatvSEKSRIMELEKDLA-LRAQEVAELRRRLESSKppgdv 506
Cdd:COG4942 100 EAQKEELAELlraLYRLGRQPPLALLLSPEDF-----------LDAVRRLQYLKYLApARREQAEELRADLAELA----- 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907165175 507 dmslSLLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEA---FQKEIKALHTATEKLSKENESLRSKLDHANKE 579
Cdd:COG4942 164 ----ALRAELEAERAELEALLAELEEERAALEALKAERQKLlarLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
970-1206 |
2.67e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 2.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 970 AKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKEnnlktveELNKSKELLSVENQKMEEFKKEIETL 1049
Cdd:COG4942 16 AAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALER-------RIAALARRIRALEQELAALEAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1050 KQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSAL 1129
Cdd:COG4942 89 EKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAE 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907165175 1130 LTEKDAELEKLRNEVTVLRGENATAKSLH-SVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERA 1206
Cdd:COG4942 169 LEAERAELEALLAELEEERAALEALKAERqKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
660-823 |
2.71e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 48.24 E-value: 2.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 660 QAKLMKIIKEKEDSLEAVKARLDSAEDQHLVEM-EDTLNKLQEAEIKANSITKELQEKElvltglqdslNQVNQVKETLE 738
Cdd:PRK12704 30 EAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAkEEIHKLRNEFEKELRERRNELQKLE----------KRLLQKEENLD 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 739 KELQTLKEKfastseeavsaQTRMQDTVNKLHQKEEQFNVLSSELEKLRE----------NLTDMEAKfkekddrEDQLV 808
Cdd:PRK12704 100 RKLELLEKR-----------EEELEKKEKELEQKQQELEKKEEELEELIEeqlqelerisGLTAEEAK-------EILLE 161
|
170
....*....|....*
gi 1907165175 809 KAKEKLENDIAEIMK 823
Cdd:PRK12704 162 KVEEEARHEAAVLIK 176
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
687-821 |
3.43e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 46.84 E-value: 3.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 687 QHLVEMEDTLNKLQEAEIKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMqdtv 766
Cdd:COG1579 7 RALLDLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQL---- 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1907165175 767 nKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEI 821
Cdd:COG1579 83 -GNVRNNKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAEL 136
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
941-1143 |
4.01e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.37 E-value: 4.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 941 DTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNlK 1020
Cdd:COG4913 607 DNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERLDASS-D 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1021 TVEELnkskellsvenqkmeefKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEERSVLN----N 1096
Cdd:COG4913 686 DLAAL-----------------EEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLArlelR 748
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1907165175 1097 QLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNE 1143
Cdd:COG4913 749 ALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
520-1264 |
4.03e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 48.12 E-value: 4.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 520 QEKLEAIHTDHQGEMtslKEHFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHANKEN-SDVIALWKSKLETAIASH 598
Cdd:TIGR00606 188 LETLRQVRQTQGQKV---QEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENeLDPLKNRLKEIEHNLSKI 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 599 QQAMEELKvSFSKGIGTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEMETMQAKLMKIIKE-KEDSLEAV 677
Cdd:TIGR00606 265 MKLDNEIK-ALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKErRLLNQEKT 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 678 KARLDSAEDQHLVEMEDTLNKLQEAEIKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVS 757
Cdd:TIGR00606 344 ELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERL 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 758 AQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSgDNSSQLTKMND 837
Cdd:TIGR00606 424 KQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAE-KNSLTETLKKE 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 838 ELRLKERSVEELQLKLTKANENAsflQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKY 917
Cdd:TIGR00606 503 VKSLQNEKADLDRKLRKLDQEME---QLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWL 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 918 EKASSEtKTKHEEILQNLQKMLADTE---------DKLKAAQEAN-----------RDLMQDMEELKTQADKAK---AAQ 974
Cdd:TIGR00606 580 HSKSKE-INQTRDRLAKLNKELASLEqnknhinneLESKEEQLSSyedklfdvcgsQDEESDLERLKEEIEKSSkqrAML 658
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 975 TAEDAM--QIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQA 1052
Cdd:TIGR00606 659 AGATAVysQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSI 738
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1053 AAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEE--------------ERSVLNNQLLEMKKRESEFRKDADEEKAS 1118
Cdd:TIGR00606 739 IDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGtimpeeesakvcltDVTIMERFQMELKDVERKIAQQAAKLQGS 818
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1119 -LQKSISLTSALLTEKDAELEKLRNEVTVLRG----ENATAKSLHSVVQTLESDKVKLELKVKNLElQLKENKRQLSS-- 1191
Cdd:TIGR00606 819 dLDRTVQQVNQEKQEKQHELDTVVSKIELNRKliqdQQEQIQHLKSKTNELKSEKLQIGTNLQRRQ-QFEEQLVELSTev 897
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907165175 1192 SSGNTDAQAEEDERAQESQQMIDFLNSVIVDLQRKNQDLK---MKVEMMSEAALN--GNGEDLNSYDSDDQEKQSKKK 1264
Cdd:TIGR00606 898 QSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKkaqDKVNDIKEKVKNihGYMKDIENKIQDGKDDYLKQK 975
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
634-1206 |
4.05e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 48.51 E-value: 4.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 634 YQHEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAEIKAnsitkel 713
Cdd:TIGR01612 472 FEEEWGSYDIKKDIDENSKQDNTVKLILMRMKDFKDIIDFMELYKPDEVPSKNIIGFDIDQNIKAKLYKEIEA------- 544
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 714 qekelvltGLQDSLNQVNQVKETLEKelqtLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQ---FNVLSSELEKLRENL 790
Cdd:TIGR01612 545 --------GLKESYELAKNWKKLIHE----IKKELEEENEDSIHLEKEIKDLFDKYLEIDDEiiyINKLKLELKEKIKNI 612
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 791 TDmeakfkeKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTkmnDELRLKERSVEELQLKLTKA---------NENAS 861
Cdd:TIGR01612 613 SD-------KNEYIKKAIDLKKIIENNNAYIDELAKISPYQVP---EHLKNKDKIYSTIKSELSKIyeddidalyNELSS 682
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 862 FLQKSI---GEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASsetktkHEEILQNLQKM 938
Cdd:TIGR01612 683 IVKENAidnTEDKAKLDDLKSKIDKEYDKIQNMETATVELHLSNIENKKNELLDIIVEIKKHI------HGEINKDLNKI 756
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 939 LADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTA------------EDAMQIMEQmTKEKTETLASLEDtkqTNAR 1006
Cdd:TIGR01612 757 LEDFKNKEKELSNKINDYAKEKDELNKYKSKISEIKNHyndqinidnikdEDAKQNYDK-SKEYIKTISIKED---EIFK 832
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1007 LQNELDTLKEnnlktvEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQ----EENVKLAEELgrtRDEVT 1082
Cdd:TIGR01612 833 IINEMKFMKD------DFLNKVDKFINFENNCKEKIDSEHEQFAELTNKIKAEISDDKlndyEKKFNDSKSL---INEIN 903
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1083 shQKLEEERSVLNNQllemkKRESEFRKDADEEKASLQKsisltsalLTEKDAEL-EKLRNEVTVLRGENATAKSLHSVV 1161
Cdd:TIGR01612 904 --KSIEEEYQNINTL-----KKVDEYIKICENTKESIEK--------FHNKQNILkEILNKNIDTIKESNLIEKSYKDKF 968
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*....
gi 1907165175 1162 Q-TLESDKVKLELKVKNLELQLKEN------------KRQLSSSSGNT-DAQAEEDERA 1206
Cdd:TIGR01612 969 DnTLIDKINELDKAFKDASLNDYEAknnelikyfndlKANLGKNKENMlYHQFDEKEKA 1027
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1005-1150 |
4.59e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 46.46 E-value: 4.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1005 ARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRD--EVT 1082
Cdd:COG1579 13 QELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNnkEYE 92
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907165175 1083 SHQK----LEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGE 1150
Cdd:COG1579 93 ALQKeiesLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAE 164
|
|
| COG4487 |
COG4487 |
Uncharacterized conserved protein, contains DUF2130 domain [Function unknown]; |
911-1060 |
5.08e-05 |
|
Uncharacterized conserved protein, contains DUF2130 domain [Function unknown];
Pssm-ID: 443580 [Multi-domain] Cd Length: 425 Bit Score: 47.25 E-value: 5.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 911 QDLKAKYEKASSETKTKHEEILQNLQKMLADTEDK--LKAAQEANRDLMQDMEELKTQADKAKAAQTAEdamqiMEQMTK 988
Cdd:COG4487 50 ELAEAKAKAQLQEQVAEKDAEIAELRARLEAEERKkaLAVAEEKEKELAALQEALAEKDAKLAELQAKE-----LELLKK 124
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907165175 989 EKTETLASLEDTKQTNARLQNELDTLKEN-NLKTVEELNKSKELLSVENQK-MEEFKKEIETLKQAAAQKSQQL 1060
Cdd:COG4487 125 ERELEDAKREAELTVEKERDEELDELKEKlKKEEEEKQLAEKSLKVAEYEKqLKDMQEQIEELKRKKEQGSTQL 198
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
335-570 |
5.39e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 5.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 335 LTETSSRYARKISGTTALQEALKEKQQHIEQLlAERDLERAEVAKATSHVGEIEQELALARDGHD------QHVLELEAK 408
Cdd:COG4913 622 LEEELAEAEERLEALEAELDALQERREALQRL-AEYSWDEIDVASAEREIAELEAELERLDASSDdlaaleEQLEELEAE 700
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 409 MDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEE-----ESITKGDLEQKSPISEDPENVATVSEK--SRIMELEK 481
Cdd:COG4913 701 LEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAaedlaRLELRALLEERFAAALGDAVERELRENleERIDALRA 780
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 482 DLALRAQEVAELRRRLESSKPPGDVDMSLSL--LQEISALQEKLEAIH-TDHQGEMTSLKEHFGARE-EAFQKEIK-ALH 556
Cdd:COG4913 781 RLNRAEEELERAMRAFNREWPAETADLDADLesLPEYLALLDRLEEDGlPEYEERFKELLNENSIEFvADLLSKLRrAIR 860
|
250
....*....|....
gi 1907165175 557 TATEKLSKENESLR 570
Cdd:COG4913 861 EIKERIDPLNDSLK 874
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
514-1049 |
6.10e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 47.32 E-value: 6.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 514 QEISALQEKLEAIHTDHQgEMTSLKEHFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVialWKSKLET 593
Cdd:TIGR04523 239 QEINEKTTEISNTQTQLN-QLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQD---WNKELKS 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 594 AIASHQQAMEELKVSFSKGIGTDSaefaELKTQIERLRLDYQHeieslqskQDSERSAHAKEMETMQAKLMKIIKEKE-- 671
Cdd:TIGR04523 315 ELKNQEKKLEEIQNQISQNNKIIS----QLNEQISQLKKELTN--------SESENSEKQRELEEKQNEIEKLKKENQsy 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 672 -DSLEAVKARLDSAEDQhlVEMEDTLNKLQEAEIKANSITKELQEKELVLTGLQ--------DSLNQVNQVKETLEKELQ 742
Cdd:TIGR04523 383 kQEIKNLESQINDLESK--IQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETiiknnseiKDLTNQDSVKELIIKNLD 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 743 TLKEKFaSTSEEAVSAQTRMQDTvnKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIM 822
Cdd:TIGR04523 461 NTRESL-ETQLKVLSRSINKIKQ--NLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKE 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 823 KMSGDNSSQLTKMNDELR--LKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQaarkheeeKKELEEKLLELE 900
Cdd:TIGR04523 538 SKISDLEDELNKDDFELKkeNLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKE--------KKDLIKEIEEKE 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 901 KKMETSYNQCQDLKAKYEKASSEtKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADkakaaqtaeDAM 980
Cdd:TIGR04523 610 KKISSLEKELEKAKKENEKLSSI-IKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKID---------DII 679
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907165175 981 QIMEQMTKEKTETlaslEDTKQTNARLQNELDTLKENNLKTVEELnkskellsvenQKMEEFKKEIETL 1049
Cdd:TIGR04523 680 ELMKDWLKELSLH----YKKYITRMIRIKDLPKLEEKYKEIEKEL-----------KKLDEFSKELENI 733
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
355-501 |
7.36e-05 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 47.16 E-value: 7.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 355 ALKEKQQHIEQLLAE---RDLERAEVAKATS-----------HVGEIEQELALARDGHDQHVLELEAKMDQLRTMVEAAD 420
Cdd:COG2433 347 AYKNKFERVEKKVPPdvdRDEVKARVIRGLSieealeeliekELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLE 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 421 REKVELLNQLEEEKRKVEDLQFRVEEESItkgdlEQKSPISEDPEnvaTVSEKSRIMELEKDLALRAQEVAELRRRLESS 500
Cdd:COG2433 427 AEVEELEAELEEKDERIERLERELSEARS-----EERREIRKDRE---ISRLDREIERLERELEEERERIEELKRKLERL 498
|
.
gi 1907165175 501 K 501
Cdd:COG2433 499 K 499
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
752-1140 |
7.68e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 47.26 E-value: 7.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 752 SEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDR-------------EDQLVKAKEKLENDI 818
Cdd:PRK04863 285 LEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHlnlvqtalrqqekIERYQADLEELEERL 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 819 AEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKsigevtlKAEQSQQ--QAARKHEEEKKELEEKL 896
Cdd:PRK04863 365 EEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQT-------RAIQYQQavQALERAKQLCGLPDLTA 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 897 LELEKKMETSYNQCQDLKAKYEKA------SSETKTKHEEILQNLQKMLADTEDklKAAQEANRDLMQDMEELKTQADKA 970
Cdd:PRK04863 438 DNAEDWLEEFQAKEQEATEELLSLeqklsvAQAAHSQFEQAYQLVRKIAGEVSR--SEAWDVARELLRRLREQRHLAEQL 515
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 971 KAAQTA-----------EDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKennlktvEELNKSKELLSVENQKM 1039
Cdd:PRK04863 516 QQLRMRlseleqrlrqqQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLS-------ESVSEARERRMALRQQL 588
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1040 EEFKKEIETLkqaaAQKSQQLSALQEENVKLAEELGrtrDEVTSHQKLEEERSvlnnQLLEMKKRESEFRKDADEEKASL 1119
Cdd:PRK04863 589 EQLQARIQRL----AARAPAWLAAQDALARLREQSG---EEFEDSQDVTEYMQ----QLLERERELTVERDELAARKQAL 657
|
410 420
....*....|....*....|.
gi 1907165175 1120 QKSISLTSALLTEKDAELEKL 1140
Cdd:PRK04863 658 DEEIERLSQPGGSEDPRLNAL 678
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
1016-1264 |
8.12e-05 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 46.87 E-value: 8.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1016 ENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSA-LQEENVKLAEELGRTRD---EVTSHQKLEEER 1091
Cdd:COG5185 232 EEALKGFQDPESELEDLAQTSDKLEKLVEQNTDLRLEKLGENAESSKrLNENANNLIKQFENTKEkiaEYTKSIDIKKAT 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1092 SVLNNQLLEMKKrESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGENATAKS---LHSVVQTLESDK 1168
Cdd:COG5185 312 ESLEEQLAAAEA-EQELEESKRETETGIQNLTAEIEQGQESLTENLEAIKEEIENIVGEVELSKSseeLDSFKDTIESTK 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1169 VKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERAqesqqmIDFLNSVIVDLQRKNQDL-KMKVEMMSEAALNGNGE 1247
Cdd:COG5185 391 ESLDEIPQNQRGYAQEILATLEDTLKAADRQIEELQRQ------IEQATSSNEEVSKLLNELiSELNKVMREADEESQSR 464
|
250
....*....|....*..
gi 1907165175 1248 DLNSYDSDDQEKQSKKK 1264
Cdd:COG5185 465 LEEAYDEINRSVRSKKE 481
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
547-775 |
9.32e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 9.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 547 AFQKEIKALHTATEKLSKENESLRSKLDHANKEnsdvialwKSKLETAIASHQQAMEELkvsfSKGIGTDSAEFAELKTQ 626
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKE--------EKALLKQLAALERRIAAL----ARRIRALEQELAALEAE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 627 IERLrldyQHEIESLQSKQDSERSAHAKEMETMQ----AKLMKIIKEKEDSLEAVKA-----RLDSAEDQHLVEMEDTLN 697
Cdd:COG4942 85 LAEL----EKEIAELRAELEAQKEELAELLRALYrlgrQPPLALLLSPEDFLDAVRRlqylkYLAPARREQAEELRADLA 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907165175 698 KLQEAEIKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQ 775
Cdd:COG4942 161 ELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
470-844 |
1.02e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 46.87 E-value: 1.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 470 VSEKSRIMELEKDLAlraqEVAELRRRLESskppgDVDMS---LSLLQEISALQEKLEAIHTDhQGEMTS-LKEHFGARE 545
Cdd:COG3096 302 AEEQYRLVEMARELE----ELSARESDLEQ-----DYQAAsdhLNLVQTALRQQEKIERYQED-LEELTErLEEQEEVVE 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 546 EAfQKEIKALHTATEKLSKENESLRSKLdhankensdviALWKSKLET----AIASHQ--QAMEELKVSFskGIGTDSAE 619
Cdd:COG3096 372 EA-AEQLAEAEARLEAAEEEVDSLKSQL-----------ADYQQALDVqqtrAIQYQQavQALEKARALC--GLPDLTPE 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 620 FAELKTQIERLRLDYQHEiESLQSKQD-SERSAHAKEMETMQAKLMKIIKEKEDSLEAVKAR---LDSAEDQHLVEMEDT 695
Cdd:COG3096 438 NAEDYLAAFRAKEQQATE-EVLELEQKlSVADAARRQFEKAYELVCKIAGEVERSQAWQTARellRRYRSQQALAQRLQQ 516
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 696 LN-KLQEAEIKANsitkELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQ---TRMQDTVNKLHQ 771
Cdd:COG3096 517 LRaQLAELEQRLR----QQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVeqrSELRQQLEQLRA 592
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 772 KEEQFN-------VLSSELEKLREN----LTDMEA----------KFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSS 830
Cdd:COG3096 593 RIKELAarapawlAAQDALERLREQsgeaLADSQEvtaamqqlleREREATVERDELAARKQALESQIERLSQPGGAEDP 672
|
410
....*....|....
gi 1907165175 831 QLtkmndeLRLKER 844
Cdd:COG3096 673 RL------LALAER 680
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
907-1083 |
1.06e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 46.36 E-value: 1.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 907 YNQCQDLKAKYEKASSETKTKHEEIlQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADK------AKAAQTAEDAM 980
Cdd:COG3883 43 QAELEELNEEYNELQAELEALQAEI-DKLQAEIAEAEAEIEERREELGERARALYRSGGSVSYldvllgSESFSDFLDRL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 981 QIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLsveNQKMEEFKKEIETLKQAAAQKSQQL 1060
Cdd:COG3883 122 SALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAEL---EAQQAEQEALLAQLSAEEAAAEAQL 198
|
170 180
....*....|....*....|...
gi 1907165175 1061 SALQEENVKLAEELGRTRDEVTS 1083
Cdd:COG3883 199 AELEAELAAAEAAAAAAAAAAAA 221
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
752-1064 |
1.08e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 46.83 E-value: 1.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 752 SEEAVSAQTrmqDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQ 831
Cdd:PRK11281 37 TEADVQAQL---DALNKQKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEE 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 832 LTKmndelRLKERSVEELQLKLTKANENASFLQKSIGEVT--LKAEQSQQQAARKheeekkeleekllelekKMETSYNQ 909
Cdd:PRK11281 114 TRE-----TLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNsqLVSLQTQPERAQA-----------------ALYANSQR 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 910 CQDLKA--KYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMeeLKTQADKAKAAQTAEDAMQIMEQ-- 985
Cdd:PRK11281 172 LQQIRNllKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDL--LQKQRDYLTARIQRLEHQLQLLQea 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 986 -------MTKEKTETLASLEDT--KQTNARLQNELDT---LKENNLKTVEELNKskelLSVENQKMeefKKEIETLKQAA 1053
Cdd:PRK11281 250 inskrltLSEKTVQEAQSQDEAarIQANPLVAQELEInlqLSQRLLKATEKLNT----LTQQNLRV---KNWLDRLTQSE 322
|
330
....*....|.
gi 1907165175 1054 AQKSQQLSALQ 1064
Cdd:PRK11281 323 RNIKEQISVLK 333
|
|
| CLIP1_ZNF |
pfam16641 |
CLIP1 zinc knuckle; This zinc knuckle domain is found tandemly repeated at the C-terminal of ... |
1266-1283 |
1.16e-04 |
|
CLIP1 zinc knuckle; This zinc knuckle domain is found tandemly repeated at the C-terminal of the cytoplasmic linker protein CLIP1 (CLIP170). It forms a complex with the CAP-Gly domain of Dynactin.
Pssm-ID: 465212 Cd Length: 17 Bit Score: 40.14 E-value: 1.16e-04
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
735-853 |
1.70e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 46.00 E-value: 1.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 735 ETLEKELQTLKEKfaSTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDR----EDQLVKA 810
Cdd:COG2433 376 LSIEEALEELIEK--ELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERierlERELSEA 453
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1907165175 811 KEKLENDI---AEIMKMSGDNsSQLTKmndELRLKERSVEELQLKL 853
Cdd:COG2433 454 RSEERREIrkdREISRLDREI-ERLER---ELEEERERIEELKRKL 495
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
545-989 |
1.72e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.91 E-value: 1.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 545 EEAFQKEIKALHTATEKLSKEN----ESLRSKLDHANKENSDVIALWK--SKLETAIASHQQAMEELKVSFSK-GIGTDS 617
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNlkelKELEEELKEAEEKEEEYAELQEelEELEEELEELEAELEELREELEKlEKLLQL 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 618 AEFAELKTQIERLRLDYQHEIESLQSKQDsERSAHAKEMETMQAKlmkiIKEKEDSLEAVKARLDSAEDQHLVEMEDTLN 697
Cdd:COG4717 128 LPLYQELEALEAELAELPERLEELEERLE-ELRELEEELEELEAE----LAELQEELEELLEQLSLATEEELQDLAEELE 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 698 KLQEaeiKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFN 777
Cdd:COG4717 203 ELQQ---RLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVL 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 778 VLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLEN-DIAEIMK-------MSGDNSSQLTKMNDELRLKERSVEEL 849
Cdd:COG4717 280 FLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEeELEELLAalglppdLSPEELLELLDRIEELQELLREAEEL 359
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 850 QLKLTKA---NENASFLQK----SIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASS 922
Cdd:COG4717 360 EEELQLEeleQEIAALLAEagveDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEE 439
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 923 ETKTKHEEiLQNLQKMLADTEDKLKAAQEANR--DLMQDMEELKTQ-ADKAKAAQTAEDAMQIMEQMTKE 989
Cdd:COG4717 440 ELEELEEE-LEELREELAELEAELEQLEEDGElaELLQELEELKAElRELAEEWAALKLALELLEEAREE 508
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
617-1187 |
2.40e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 45.66 E-value: 2.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 617 SAEFAELKTQIERLRL---DYQHEIESLQSKQDsERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLD-----SAEDQH 688
Cdd:PRK01156 165 ERNYDKLKDVIDMLRAeisNIDYLEEKLKSSNL-ELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDdynnlKSALNE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 689 LVEMEDTLNKLQEAEIKANSITKELQEKELVLTGLQDSLNQV---------NQVKE--TLEKELQTLKEKFASTSEEAVS 757
Cdd:PRK01156 244 LSSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIindpvyknrNYINDyfKYKNDIENKKQILSNIDAEINK 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 758 AQTRMQdTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMND 837
Cdd:PRK01156 324 YHAIIK-KLSVLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEI 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 838 ELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAArkheeekkeleekllelekkMETSYNQCQDLKAKY 917
Cdd:PRK01156 403 DPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNME--------------------MLNGQSVCPVCGTTL 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 918 EKASSETKTKH-EEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELktQADKAKAAQTAEDAMQIMEQMTKEKTETLAS 996
Cdd:PRK01156 463 GEEKSNHIINHyNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYL--ESEEINKSINEYNKIESARADLEDIKIKINE 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 997 LEDTKQTNARLQNELDTLKENNL--KTVEELNKSKELLSVENQKMEEFKKEIET-LKQAAAQKSQQLSALQEENVKLAEE 1073
Cdd:PRK01156 541 LKDKHDKYEEIKNRYKSLKLEDLdsKRTSWLNALAVISLIDIETNRSRSNEIKKqLNDLESRLQEIEIGFPDDKSYIDKS 620
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1074 LGRTRDEVTSHQKLEEERSVLNNQLLEMKKRESEFRKDAdEEKASLQKSISLTSALLTEKDAELEKLRNEvtvLRGENAT 1153
Cdd:PRK01156 621 IREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQI-AEIDSIIPDLKEITSRINDIEDNLKKSRKA---LDDAKAN 696
|
570 580 590
....*....|....*....|....*....|....
gi 1907165175 1154 AKSLHSVVQTLESDKVKLELKVKNLELQLKENKR 1187
Cdd:PRK01156 697 RARLESTIEILRTRINELSDRINDINETLESMKK 730
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
425-1212 |
2.72e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 45.55 E-value: 2.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 425 ELLNQLEEEKRKVEDLQFRVEEESitkGDLEQKSPISEDPENV------ATVSEKSRIMELEKDLALRAQEVAELRRRLE 498
Cdd:pfam01576 5 EEMQAKEEELQKVKERQQKAESEL---KELEKKHQQLCEEKNAlqeqlqAETELCAEAEEMRARLAARKQELEEILHELE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 499 SSkppgdvdmslslLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQK-----------------EIKALHTATEK 561
Cdd:pfam01576 82 SR------------LEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKlqlekvtteakikkleeDILLLEDQNSK 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 562 LSKENESLRSKL----DHANKENSDVIALWKSKLEtaiasHQQAMEELKVSFSKGIGTdSAEFAELKTQIERLRLDYQHE 637
Cdd:pfam01576 150 LSKERKLLEERIseftSNLAEEEEKAKSLSKLKNK-----HEAMISDLEERLKKEEKG-RQELEKAKRKLEGESTDLQEQ 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 638 IESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSaeDQHLVEMEDTLNKLQEAEIKANSITKELQEK- 716
Cdd:pfam01576 224 IAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIREL--EAQISELQEDLESERAARNKAEKQRRDLGEEl 301
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 717 ELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQD-------TVNKLHQKEEQFNVLSSELEKLREN 789
Cdd:pfam01576 302 EALKTELEDTLDTTAAQQELRSKREQEVTELKKALEEETRSHEAQLQEmrqkhtqALEELTEQLEQAKRNKANLEKAKQA 381
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 790 L----TDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQK 865
Cdd:pfam01576 382 LesenAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSK 461
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 866 SIGEVtlkaeQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEkassETKTKHEEILQNLQKMLADTEDK 945
Cdd:pfam01576 462 DVSSL-----ESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEE----EAKRNVERQLSTLQAQLSDMKKK 532
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 946 LKAAQEAnrdlMQDMEElktqaDKAKAAQTAEDAMQIMEqmtkEKTETLASLEDTKQtnaRLQNELDTLkennlktVEEL 1025
Cdd:pfam01576 533 LEEDAGT----LEALEE-----GKKRLQRELEALTQQLE----EKAAAYDKLEKTKN---RLQQELDDL-------LVDL 589
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1026 NKSKELLSVENQKMEEFKK---EIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQK-LEEERSVLNNQLLEM 1101
Cdd:pfam01576 590 DHQRQLVSNLEKKQKKFDQmlaEEKAISARYAEERDRAEAEAREKETRALSLARALEEALEAKEeLERTNKQLRAEMEDL 669
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1102 KKRESEFRKDADEekasLQKSISLTSALLTEKDAELEKLRNEVTVlrGENATAKsLHSVVQTLesdKVKLELKVKNLELQ 1181
Cdd:pfam01576 670 VSSKDDVGKNVHE----LERSKRALEQQVEEMKTQLEELEDELQA--TEDAKLR-LEVNMQAL---KAQFERDLQARDEQ 739
|
810 820 830
....*....|....*....|....*....|.
gi 1907165175 1182 LKENKRQLSSSSGNTDAQAeEDERAQESQQM 1212
Cdd:pfam01576 740 GEEKRRQLVKQVRELEAEL-EDERKQRAQAV 769
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
735-1235 |
4.82e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 4.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 735 ETLEkELQTLKEKFASTSEEAvsAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKL 814
Cdd:COG4913 252 ELLE-PIRELAERYAAARERL--AELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDEL 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 815 ENDIAEImkmSGDNSSQLtkmndelrlkERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEE 894
Cdd:COG4913 329 EAQIRGN---GGDRLEQL----------EREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEA 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 895 KLLELEKKMETSYnqcqDLKAKYEKASSETKTKHEEIL----------QNLQKMLADTEDKLKAAQEANR---DLMQDME 961
Cdd:COG4913 396 LEEELEALEEALA----EAEAALRDLRRELRELEAEIAslerrksnipARLLALRDALAEALGLDEAELPfvgELIEVRP 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 962 E-----------LKTQA-------DKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAR-LQNELDTlKENNLKT- 1021
Cdd:COG4913 472 EeerwrgaiervLGGFAltllvppEHYAAALRWVNRLHLRGRLVYERVRTGLPDPERPRLDPDsLAGKLDF-KPHPFRAw 550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1022 -VEELNKSKELLSVENQkmEEFKKE--------------------------------------IETLKQAAAQKSQQLSA 1062
Cdd:COG4913 551 lEAELGRRFDYVCVDSP--EELRRHpraitragqvkgngtrhekddrrrirsryvlgfdnrakLAALEAELAELEEELAE 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1063 LQEENVKLAEELGRTRDEVTSHQKLEEersvLNNQLLEMKKRESEFRkDADEEKASLQKSisltSALLTEKDAELEKLRN 1142
Cdd:COG4913 629 AEERLEALEAELDALQERREALQRLAE----YSWDEIDVASAEREIA-ELEAELERLDAS----SDDLAALEEQLEELEA 699
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1143 EVTVLRGEnatakslhsvVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEE--DERAQE------SQQMID 1214
Cdd:COG4913 700 ELEELEEE----------LDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRAllEERFAAalgdavERELRE 769
|
570 580
....*....|....*....|.
gi 1907165175 1215 FLNSVIVDLQRKNQDLKMKVE 1235
Cdd:COG4913 770 NLEERIDALRARLNRAEEELE 790
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
943-1115 |
5.35e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.38 E-value: 5.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 943 EDKLKAAQEANRDLMQD----MEELKtqadKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENN 1018
Cdd:PRK12704 30 EAKIKEAEEEAKRILEEakkeAEAIK----KEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1019 LKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKlAEELGRTRDEvtshqkLEEERSVLnnql 1098
Cdd:PRK12704 106 EKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAK-EILLEKVEEE------ARHEAAVL---- 174
|
170
....*....|....*..
gi 1907165175 1099 leMKKRESEFRKDADEE 1115
Cdd:PRK12704 175 --IKEIEEEAKEEADKK 189
|
|
| CCCAP |
pfam15964 |
Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in ... |
925-1178 |
6.09e-04 |
|
Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in eukaryotes. CCCAP is also known as SDCCAG8, serologically defined colon cancer antigen 8. It is associated with the centrosome.
Pssm-ID: 435040 [Multi-domain] Cd Length: 703 Bit Score: 44.13 E-value: 6.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 925 KTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQiMEQMTKEKTETLASLEDTKQTN 1004
Cdd:pfam15964 362 KSELERQKERLEKELASQQEKRAQEKEALRKEMKKEREELGATMLALSQNVAQLEAQ-VEKVTREKNSLVSQLEEAQKQL 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1005 ARLQNELDT--------LKENNLKTVEELNKSKEL-------LSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVK 1069
Cdd:pfam15964 441 ASQEMDVTKvcgemryqLNQTKMKKDEAEKEHREYrtktgrqLEIKDQEIEKLGLELSESKQRLEQAQQDAARAREECLK 520
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1070 LAEELGRTRDEV--TSHQKLEEERSVLNN---QLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEV 1144
Cdd:pfam15964 521 LTELLGESEHQLhlTRLEKESIQQSFSNEakaQALQAQQREQELTQKMQQMEAQHDKTVNEQYSLLTSQNTFIAKLKEEC 600
|
250 260 270
....*....|....*....|....*....|....
gi 1907165175 1145 TVLrgenatAKSLHSVVQTLESDKVKLELKVKNL 1178
Cdd:pfam15964 601 CTL------AKKLEEITQKSRSEVEQLSQEKEYL 628
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
700-968 |
6.10e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 44.24 E-value: 6.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 700 QEAEIKANSITKELQEkelvlTGLQDSLNQVNQVKETLEKELQTLKEKfASTSEEAVSA-QTRmqdtvNKLHQKEEQFNV 778
Cdd:COG3206 148 ELAAAVANALAEAYLE-----QNLELRREEARKALEFLEEQLPELRKE-LEEAEAALEEfRQK-----NGLVDLSEEAKL 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 779 LSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMkmsgdNSSQLTKMNDELRLKERSVEELQLKLTKANE 858
Cdd:COG3206 217 LLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELL-----QSPVIQQLRAQLAELEAELAELSARYTPNHP 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 859 nasflqksigevTLKAEQSQQQAARKheEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTkheeiLQNLQKM 938
Cdd:COG3206 292 ------------DVIALRAQIAALRA--QLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAE-----LPELEAE 352
|
250 260 270
....*....|....*....|....*....|
gi 1907165175 939 LADTEDKLKAAQEANRDLMQDMEELKTQAD 968
Cdd:COG3206 353 LRRLEREVEVARELYESLLQRLEEARLAEA 382
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
911-1264 |
6.19e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 44.04 E-value: 6.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 911 QDLKAKYEKASSETKTKheeilqNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAkaaqtaedamqimeqmTKEK 990
Cdd:pfam10174 213 EELHRRNQLQPDPAKTK------ALQTVIEMKDTKISSLERNIRDLEDEVQMLKTNGLLH----------------TEDR 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 991 TETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKL 1070
Cdd:pfam10174 271 EEEIKQMEVYKSHSKFMKNKIDQLKQELSKKESELLALQTKLETLTNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDAL 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1071 A---EELGRTRDEVTSH-QKLEEERSVLNNQLLEMKKresefRKDADEEKAS-LQKSISLTSALLTEKDAELEKLRNEvt 1145
Cdd:pfam10174 351 RlrlEEKESFLNKKTKQlQDLTEEKSTLAGEIRDLKD-----MLDVKERKINvLQKKIENLQEQLRDKDKQLAGLKER-- 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1146 vlrgenatakslhsvVQTLESDKVKLELKVKNLELQLKENKRQLssssgntdaQAEEDERAQESQQMIDFLNsvivDLQR 1225
Cdd:pfam10174 424 ---------------VKSLQTDSSNTDTALTTLEEALSEKERII---------ERLKEQREREDRERLEELE----SLKK 475
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 1907165175 1226 KNQDLKMKVEMM------SEAALNGNGEDLNSYDSDDQEKQSKKK 1264
Cdd:pfam10174 476 ENKDLKEKVSALqpelteKESSLIDLKEHASSLASSGLKKDSKLK 520
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
662-1267 |
6.51e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.44 E-value: 6.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 662 KLMKIIKEKEDSLEAVKARL-DSAEDQHLVEMEDTLNKLQ-EAEIKANSITKELQEKELVLTGLQDSLNQVnqvkETLEK 739
Cdd:pfam12128 183 KIAKAMHSKEGKFRDVKSMIvAILEDDGVVPPKSRLNRQQvEHWIRDIQAIAGIMKIRPEFTKLQQEFNTL----ESAEL 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 740 ELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQ----KEEQFNVLSSELeklRENLTDMEAKFKEKDDREDQLVKAKEKLE 815
Cdd:pfam12128 259 RLSHLHFGYKSDETLIASRQEERQETSAELNQllrtLDDQWKEKRDEL---NGELSAADAAVAKDRSELEALEDQHGAFL 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 816 NDIAEIMKMSGDN----SSQLTKMNDELRLKERSVEELQLKLTKANENASF-LQKSIGEVTLKAEQSQQQAARKHEEEKK 890
Cdd:pfam12128 336 DADIETAAADQEQlpswQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEqNNRDIAGIKDKLAKIREARDRQLAVAED 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 891 ELEEKLLELEKKMETSYNQCQDLKAKYEKASSETK------TKHEEILQNL---QKMLADTEDKLKAAQEANRDLMQDME 961
Cdd:pfam12128 416 DLQALESELREQLEAGKLEFNEEEYRLKSRLGELKlrlnqaTATPELLLQLenfDERIERAREEQEAANAEVERLQSELR 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 962 ELKTQADKA--------KAAQTAEDAMQIMEQMTKEKTETL-----ASLEDTKQTNARLQNELDTLKENNLKTVEELNKS 1028
Cdd:pfam12128 496 QARKRRDQAsealrqasRRLEERQSALDELELQLFPQAGTLlhflrKEAPDWEQSIGKVISPELLHRTDLDPEVWDGSVG 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1029 KEL------LSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQK-LEEERSVLNNQLLEM 1101
Cdd:pfam12128 576 GELnlygvkLDLKRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASReETFARTALKNARLDL 655
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1102 KKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGENATAKSLHSVVQTLESDKVKLELKVKnlELQ 1181
Cdd:pfam12128 656 RRLFDEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQ--LAL 733
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1182 LKENKRQLSSSSGNTDAQAEEDERAQESQQMIDflNSVIVDLQRKNQDLKMKVEMMSeaalnGNGEDLNSYDSDDQEKQS 1261
Cdd:pfam12128 734 LKAAIAARRSGAKAELKALETWYKRDLASLGVD--PDVIAKLKREIRTLERKIERIA-----VRRQEVLRYFDWYQETWL 806
|
....*.
gi 1907165175 1262 KKKPRL 1267
Cdd:pfam12128 807 QRRPRL 812
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
334-1210 |
6.79e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 44.40 E-value: 6.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 334 LLTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERA-------EVAKATSHVGEIEQELALARDGHDQHVLELE 406
Cdd:pfam01576 76 ILHELESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAarqklqlEKVTTEAKIKKLEEDILLLEDQNSKLSKERK 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 407 AKMDQLRTMVE--AADREKVELLNQLEEEKRKV-EDLQFRVEEESITKGDLEQ---KSPISEDPENVATVSEKSRIMELE 480
Cdd:pfam01576 156 LLEERISEFTSnlAEEEEKAKSLSKLKNKHEAMiSDLEERLKKEEKGRQELEKakrKLEGESTDLQEQIAELQAQIAELR 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 481 KDLALRAQEVAELRRRLE-SSKPPGDVDMSLSLLQ-EISALQEKLEAiHTDHQGEMTSLKEHFGAREEAFQKEIKALHTA 558
Cdd:pfam01576 236 AQLAKKEEELQAALARLEeETAQKNNALKKIRELEaQISELQEDLES-ERAARNKAEKQRRDLGEELEALKTELEDTLDT 314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 559 T-------EKLSKENESLRSKLDHANKENSDVIALWKSKLETAIASHQQAMEELK---VSFSKGIGTDSAEFAELKTQIE 628
Cdd:pfam01576 315 TaaqqelrSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKrnkANLEKAKQALESENAELQAELR 394
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 629 RL---RLDYQHEIESLQSkQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQHL----------VEMEDT 695
Cdd:pfam01576 395 TLqqaKQDSEHKRKKLEG-QLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIklskdvssleSQLQDT 473
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 696 LNKLQEAEIKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLK----------EKFASTSEEAVSAQTRMQDT 765
Cdd:pfam01576 474 QELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQaqlsdmkkklEEDAGTLEALEEGKKRLQRE 553
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 766 VNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERS 845
Cdd:pfam01576 554 LEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEARE 633
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 846 VEELQLKLTKANENASFLQKSIGEVT--LKAEQSQQQAArkheeekkeleekllelekkmetsynqcQDLKAKYEKASSE 923
Cdd:pfam01576 634 KETRALSLARALEEALEAKEELERTNkqLRAEMEDLVSS----------------------------KDDVGKNVHELER 685
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 924 TKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTaEDAMQIMEQMTKEKTETLASLEDTKQT 1003
Cdd:pfam01576 686 SKRALEQQVEEMKTQLEELEDELQATEDAKLRLEVNMQALKAQFERDLQARD-EQGEEKRRQLVKQVRELEAELEDERKQ 764
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1004 NA-------RLQNELDTLKENnlktVEELNKSKE----LLSVENQKMEEFKKEIETLKQA-------AAQKSQQLSALQE 1065
Cdd:pfam01576 765 RAqavaakkKLELDLKELEAQ----IDAANKGREeavkQLKKLQAQMKDLQRELEEARASrdeilaqSKESEKKLKNLEA 840
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1066 ENVKLAEELG---RTRDEV-TSHQKLEEE--RSVLNNQLLEMKKRESEFR-KDADEEKASLQKSISLTSALLTEKDAELE 1138
Cdd:pfam01576 841 ELLQLQEDLAaseRARRQAqQERDELADEiaSGASGKSALQDEKRRLEARiAQLEEELEEEQSNTELLNDRLRKSTLQVE 920
|
890 900 910 920 930 940 950
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907165175 1139 KLRNEVTVLRgenatakslhSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERAQESQ 1210
Cdd:pfam01576 921 QLTTELAAER----------STSQKSESARQQLERQNKELKAKLQEMEGTVKSKFKSSIAALEAKIAQLEEQ 982
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
671-1065 |
9.05e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.79 E-value: 9.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 671 EDSLEAVKARLDS-----AEDQHLVEMEDTLNKLQEAEikaNSITKELQEKELVLTGLQDSLNQVNQVkETLEKELQTLK 745
Cdd:COG3096 285 ERALELRRELFGArrqlaEEQYRLVEMARELEELSARE---SDLEQDYQAASDHLNLVQTALRQQEKI-ERYQEDLEELT 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 746 EKFASTSEEAVSAQTRMQDTVNKLHQKEEqfnvlssELEKLRENLTDMEAKFKEKDDRE---DQLVKAKEKLENdIAEIM 822
Cdd:COG3096 361 ERLEEQEEVVEEAAEQLAEAEARLEAAEE-------EVDSLKSQLADYQQALDVQQTRAiqyQQAVQALEKARA-LCGLP 432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 823 KMSGDNSSQ-LTKMNDELRLKERSVEELQLKLTKANENAS-------FLQKSIGEV-TLKAEQSQQQAARKHEEEKKELE 893
Cdd:COG3096 433 DLTPENAEDyLAAFRAKEQQATEEVLELEQKLSVADAARRqfekayeLVCKIAGEVeRSQAWQTARELLRRYRSQQALAQ 512
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 894 EKL--LELEKKMETSYNQCQD---LKAKYEKASSETKTKHEEI---LQNLQKMLADTEDKLKAAQEANRDLMQDMEELKT 965
Cdd:COG3096 513 RLQqlRAQLAELEQRLRQQQNaerLLEEFCQRIGQQLDAAEELeelLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRA 592
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 966 Q----ADKAKAAQTAEDAMQIMEQMTKEktetlaSLEDTKQTNARLQNELDTLKennlktveELNKSKELLsveNQKMEE 1041
Cdd:COG3096 593 RikelAARAPAWLAAQDALERLREQSGE------ALADSQEVTAAMQQLLERER--------EATVERDEL---AARKQA 655
|
410 420
....*....|....*....|....
gi 1907165175 1042 FKKEIETLKQAAAQKSQQLSALQE 1065
Cdd:COG3096 656 LESQIERLSQPGGAEDPRLLALAE 679
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
713-1237 |
1.20e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 43.35 E-value: 1.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 713 LQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTD 792
Cdd:PRK01156 164 LERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 793 MEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELqLKLTKANENASFLQKSI-GEVT 871
Cdd:PRK01156 244 LSSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDY-FKYKNDIENKKQILSNIdAEIN 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 872 -----------LKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLA 940
Cdd:PRK01156 323 kyhaiikklsvLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEI 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 941 DTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDA----MQIMEQMTK----------EKTETLasLEDTKQTNAR 1006
Cdd:PRK01156 403 DPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDElsrnMEMLNGQSVcpvcgttlgeEKSNHI--INHYNEKKSR 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1007 LQNELDTLKENNLKTVEELNKSKELLS-VENQKMEEFKKEIETLKQAAAQKSQ---QLSALQEENVKLAE--------EL 1074
Cdd:PRK01156 481 LEEKIREIEIEVKDIDEKIVDLKKRKEyLESEEINKSINEYNKIESARADLEDikiKINELKDKHDKYEEiknrykslKL 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1075 GRTRDEVTSHQKLEEERSVLNNQLLemKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGENATA 1154
Cdd:PRK01156 561 EDLDSKRTSWLNALAVISLIDIETN--RSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEI 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1155 KSLHSVVQTLESdkvklelKVKNLelqlkenKRQLSSSSGNTDAQAEEDERAQESQQMIDFLNSVIVDLQRKNQDLKMKV 1234
Cdd:PRK01156 639 QENKILIEKLRG-------KIDNY-------KKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTI 704
|
...
gi 1907165175 1235 EMM 1237
Cdd:PRK01156 705 EIL 707
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
546-852 |
1.21e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 43.02 E-value: 1.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 546 EAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIALWKSKLETAIASHQQAMEELKVSFSKGIGTDSAE----FA 621
Cdd:COG5185 242 ESELEDLAQTSDKLEKLVEQNTDLRLEKLGENAESSKRLNENANNLIKQFENTKEKIAEYTKSIDIKKATESLEeqlaAA 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 622 ELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEdsLEAVKARLDSAEDQHLVEMEDTLNKLQE 701
Cdd:COG5185 322 EAEQELEESKRETETGIQNLTAEIEQGQESLTENLEAIKEEIENIVGEVE--LSKSSEELDSFKDTIESTKESLDEIPQN 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 702 AEIKANSItkelqekelvLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVnKLHQKEEQFNVLSS 781
Cdd:COG5185 400 QRGYAQEI----------LATLEDTLKAADRQIEELQRQIEQATSSNEEVSKLLNELISELNKVM-READEESQSRLEEA 468
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907165175 782 ELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLK 852
Cdd:COG5185 469 YDEINRSVRSKKEDLNEELTQIESRVSTLKATLEKLRAKLERQLEGVRSKLDQVAESLKDFMRARGYAHIL 539
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
420-1041 |
1.27e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 43.53 E-value: 1.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 420 DREKVELL---NQLEEEKRKVEDLQFRVEEESITKGDLEQKSPISEDPENVATVSEKSRIMELEKDLALRAQEVAELRRR 496
Cdd:COG5022 857 AKKRFSLLkkeTIYLQSAQRVELAERQLQELKIDVKSISSLKLVNLELESEIIELKKSLSSDLIENLEFKTELIARLKKL 936
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 497 LESSkppgDVDMSLSLLQEisaLQEKLEAIHTdhqgEMTSLKEHFGAREEAFQKE---IKALHTATEKLSKENESLRSKL 573
Cdd:COG5022 937 LNNI----DLEEGPSIEYV---KLPELNKLHE----VESKLKETSEEYEDLLKKStilVREGNKANSELKNFKKELAELS 1005
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 574 dhanKENSDVIALWKS--KLETAIASHQQAMeelkvSFSKGIGTDSAEFAELKTQIERLRLDY-QHEIESLQSKQDSERS 650
Cdd:COG5022 1006 ----KQYGALQESTKQlkELPVEVAELQSAS-----KIISSESTELSILKPLQKLKGLLLLENnQLQARYKALKLRRENS 1076
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 651 ahakEMETMQAKLMKIIKEKEDSLEAVKARldsAEDQHLVEMEDTLNKLQEAEIKANSITKELQEKELVLTGLQDSLNQV 730
Cdd:COG5022 1077 ----LLDDKQLYQLESTENLLKTINVKDLE---VTNRNLVKPANVLQFIVAQMIKLNLLQEISKFLSQLVNTLEPVFQKL 1149
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 731 NqVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHqkEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKA 810
Cdd:COG5022 1150 S-VLQLELDGLFWEANLEALPSPPPFAALSEKRLYQSALY--DEKSKLSSSEVNDLKNELIALFSKIFSGWPRGDKLKKL 1226
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 811 KEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEEL-----QLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKH 885
Cdd:COG5022 1227 ISEGWVPTEYSTSLKGFNNLNKKFDTPASMSNEKLLSLLnsidnLLSSYKLEEEVLPATINSLLQYINVGLFNALRTKAS 1306
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 886 EEEKKELEekllelekkmETSYNQCQDLKAKYEKASSETKTKHEE------ILQNLQKMLADTEDKLKAAQEANRDLMQD 959
Cdd:COG5022 1307 SLRWKSAT----------EVNYNSEELDDWCREFEISDVDEELEEliqavkVLQLLKDDLNKLDELLDACYSLNPAEIQN 1376
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 960 MEELKTQADKaKAAQTAEDAMQIMEQMTKEK----TETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVE 1035
Cdd:COG5022 1377 LKSRYDPADK-ENNLPKEILKKIEALLIKQElqlsLEGKDETEVHLSEIFSEEKSLISLDRNSIYKEEVLSSLSALLTKE 1455
|
....*.
gi 1907165175 1036 NQKMEE 1041
Cdd:COG5022 1456 KIALLD 1461
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
376-1041 |
1.34e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.11 E-value: 1.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 376 EVAKATSHVGEIEQELALARDGHDqhvlELEAKMDQLRTMVEaadREKVELLNQLEEEKRKVEDLQ-FRVEEESITKGDL 454
Cdd:TIGR00606 406 EAKTAAQLCADLQSKERLKQEQAD----EIRDEKKGLGRTIE---LKKEILEKKQEELKFVIKELQqLEGSSDRILELDQ 478
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 455 EQKSPISEDP---ENVATVSEKSRIM-------ELEKDLALRAQEVAELRRRLESSKppgdvdMSLSLLQEISALQEKLE 524
Cdd:TIGR00606 479 ELRKAERELSkaeKNSLTETLKKEVKslqnekaDLDRKLRKLDQEMEQLNHHTTTRT------QMEMLTKDKMDKDEQIR 552
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 525 AIHTDHQGEMTSLKEHFGAREE------AFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIA------------- 585
Cdd:TIGR00606 553 KIKSRHSDELTSLLGYFPNKKQledwlhSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEqlssyedklfdvc 632
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 586 --------LWKSKLETAIASHQQAMEELKVSFSKGIGTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEME 657
Cdd:TIGR00606 633 gsqdeesdLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLK 712
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 658 TMQAKLMKIIKEKEDSLEAVKARlDSAEDQHLVEMEDTLNKLQEAEIKANSITKELQEKELVLTGLQDSLNQVN------ 731
Cdd:TIGR00606 713 STESELKKKEKRRDEMLGLAPGR-QSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKvcltdv 791
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 732 QVKETLEKELQTLKEKFASTSEE--AVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRenltdmeakfKEKDDREDQLVK 809
Cdd:TIGR00606 792 TIMERFQMELKDVERKIAQQAAKlqGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNR----------KLIQDQQEQIQH 861
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 810 AKEKLENDIAEIMKMsGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGevtlKAEQSQQQAARKHEEEK 889
Cdd:TIGR00606 862 LKSKTNELKSEKLQI-GTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLE----KDQQEKEELISSKETSN 936
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 890 KELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADK 969
Cdd:TIGR00606 937 KKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERW 1016
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 970 AKAAQTaedaMQIMEQMTKEKTETLAS---------LEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKME 1040
Cdd:TIGR00606 1017 LQDNLT----LRKRENELKEVEEELKQhlkemgqmqVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELR 1092
|
.
gi 1907165175 1041 E 1041
Cdd:TIGR00606 1093 E 1093
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
932-1109 |
1.46e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.08 E-value: 1.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 932 LQNLQKMLADTEDKLKAAQEANR---------DLMQDMEELKTQADKAKAA-QTAEDAMQIMEQMTKEKTETLASLEDT- 1000
Cdd:COG3206 184 LPELRKELEEAEAALEEFRQKNGlvdlseeakLLLQQLSELESQLAEARAElAEAEARLAALRAQLGSGPDALPELLQSp 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1001 ---------KQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLA 1071
Cdd:COG3206 264 viqqlraqlAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARL 343
|
170 180 190
....*....|....*....|....*....|....*...
gi 1907165175 1072 EELGRTRDEVtshQKLEEERSVLNNQLLEMKKRESEFR 1109
Cdd:COG3206 344 AELPELEAEL---RRLEREVEVARELYESLLQRLEEAR 378
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
964-1253 |
1.48e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 42.58 E-value: 1.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 964 KTQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFK 1043
Cdd:COG4372 21 KTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQ 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1044 KEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEERSVlnnqllEMKKRESEFRKDADEEKASLQKSI 1123
Cdd:COG4372 101 EELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREE------ELKELEEQLESLQEELAALEQELQ 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1124 SLTSALLTEKDAELEKLRNEVTVLRGENATAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEED 1203
Cdd:COG4372 175 ALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEE 254
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1204 ERAQESQQMIDFLNSVIVDLQRKNQDLKMKVEMMSEAALNGNGEDLNSYD 1253
Cdd:COG4372 255 VILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNL 304
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
691-884 |
1.57e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.51 E-value: 1.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 691 EMEDTLNKLQEAEIKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLH 770
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALY 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 771 QKEEQFNVLS--------------------------SELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKM 824
Cdd:COG3883 97 RSGGSVSYLDvllgsesfsdfldrlsalskiadadaDLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQ 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 825 SGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARK 884
Cdd:COG3883 177 QAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAA 236
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
699-840 |
1.80e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.46 E-value: 1.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 699 LQEAEIKANSITKE--LQEKELVLtglqdslnqvnQVKETLEKELQTLKEKFastseeavsaqtrmQDTVNKLHQKEEQF 776
Cdd:PRK12704 44 LEEAKKEAEAIKKEalLEAKEEIH-----------KLRNEFEKELRERRNEL--------------QKLEKRLLQKEENL 98
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907165175 777 NVLSSELEKLRENLtdmEAKFKEKDDREDQLVKAKEKLENDIAE-------IMKMSGDNSSQ--LTKMNDELR 840
Cdd:PRK12704 99 DRKLELLEKREEEL---EKKEKELEQKQQELEKKEEELEELIEEqlqelerISGLTAEEAKEilLEKVEEEAR 168
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
353-844 |
1.83e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.02 E-value: 1.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 353 QEALKEKQqhieqllAERDLERAEVAKATSHVGEIEQELALARDGHDQHVLELEakmdqlrtmveaadREKVELLNQLEE 432
Cdd:PRK04863 246 LEAIRVTQ-------SDRDLFKHLITESTNYVAADYMRHANERRVHLEEALELR--------------RELYTSRRQLAA 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 433 EKRKVEDLQFRVEEESITKGDLEQKSPISEDPENvatvseksRIMElekdlALRAQE--------VAELRRRLESSKppg 504
Cdd:PRK04863 305 EQYRLVEMARELAELNEAESDLEQDYQAASDHLN--------LVQT-----ALRQQEkieryqadLEELEERLEEQN--- 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 505 dvdmslSLLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAF---QKEIKALHTATEKLSKENESLRskLDHANKENS 581
Cdd:PRK04863 369 ------EVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALdvqQTRAIQYQQAVQALERAKQLCG--LPDLTADNA 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 582 DVIalwkskLETAIASHQQAMEEL-----KVSFSKGIGTDSAEFAELKTQI--ERLRLDYQHEIESLQSKQDSERsAHAK 654
Cdd:PRK04863 441 EDW------LEEFQAKEQEATEELlsleqKLSVAQAAHSQFEQAYQLVRKIagEVSRSEAWDVARELLRRLREQR-HLAE 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 655 EMETMQAKLmkiiKEKEDSLEavkarldsaEDQHLVEMEDTLNKLQEAEIKANSITKELQ-EKELVLTGLQDSLNQVNQV 733
Cdd:PRK04863 514 QLQQLRMRL----SELEQRLR---------QQQRAERLLAEFCKRLGKNLDDEDELEQLQeELEARLESLSESVSEARER 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 734 KETLEKELQTLKEKFASTSEEAVSAQTrMQDTVNKL--HQKEEQFNvlSSELEKLRENLTDMEAKFKEKddrEDQLVKAK 811
Cdd:PRK04863 581 RMALRQQLEQLQARIQRLAARAPAWLA-AQDALARLreQSGEEFED--SQDVTEYMQQLLERERELTVE---RDELAARK 654
|
490 500 510
....*....|....*....|....*....|...
gi 1907165175 812 EKLEndiAEIMKMSGDNSSQLTKMNdelRLKER 844
Cdd:PRK04863 655 QALD---EEIERLSQPGGSEDPRLN---ALAER 681
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
841-1074 |
2.70e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 42.21 E-value: 2.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 841 LKERSVEELQLKLTKAN-ENASFLQKSIGEVTLKAEQSQQQAARkheeekkeleeklleLEKKMETSYNQCQDLKAKYEK 919
Cdd:PRK11281 48 LNKQKLLEAEDKLVQQDlEQTLALLDKIDRQKEETEQLKQQLAQ---------------APAKLRQAQAELEALKDDNDE 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 920 ASSETKTKHEeiLQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAedAMQIMEQMTKEKTETLASLED 999
Cdd:PRK11281 113 ETRETLSTLS--LRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYA--NSQRLQQIRNLLKGGKVGGKA 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1000 TKQT-----NARL-----QNELD-TLKENNLKTVEELNKSKELLSVENQKMEEF----------KKEIETLKQAAAQKSQ 1058
Cdd:PRK11281 189 LRPSqrvllQAEQallnaQNDLQrKSLEGNTQLQDLLQKQRDYLTARIQRLEHQlqllqeainsKRLTLSEKTVQEAQSQ 268
|
250
....*....|....*.
gi 1907165175 1059 QLSALQEENVKLAEEL 1074
Cdd:PRK11281 269 DEAARIQANPLVAQEL 284
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
908-1230 |
2.72e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.93 E-value: 2.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 908 NQCQDLKAKYEKASSETKTKhEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKaaqtaedamQIMEQMT 987
Cdd:TIGR04523 33 TEEKQLEKKLKTIKNELKNK-EKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNK---------DKINKLN 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 988 KEKTETLASLEDTKQTNARLQNELDTLK-------ENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQL 1060
Cdd:TIGR04523 103 SDLSKINSEIKNDKEQKNKLEVELNKLEkqkkenkKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEK 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1061 SALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSA-------LLTEK 1133
Cdd:TIGR04523 183 LNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNtqtqlnqLKDEQ 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1134 DAELEKLRNEVTVLRGENATAKSLHSVVQTLESD-----KVKLELKVKNLELQLKENKRQLSsssgntdaqaEEDERAQE 1208
Cdd:TIGR04523 263 NKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEisdlnNQKEQDWNKELKSELKNQEKKLE----------EIQNQISQ 332
|
330 340
....*....|....*....|..
gi 1907165175 1209 SQQMIDFLNSVIVDLQRKNQDL 1230
Cdd:TIGR04523 333 NNKIISQLNEQISQLKKELTNS 354
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
404-574 |
2.84e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.06 E-value: 2.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 404 ELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEQKspISEDPENVATVSEKSRIMELEKDL 483
Cdd:COG1579 14 ELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELE--IEEVEARIKKYEEQLGNVRNNKEY 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 484 ALRAQEVAELRRRLESSKppgdvDMSLSLLQEISALQEKLEAIhtdhQGEMTSLKEHFGAREEAFQKEIKALHTATEKLS 563
Cdd:COG1579 92 EALQKEIESLKRRISDLE-----DEILELMERIEELEEELAEL----EAELAELEAELEEKKAELDEELAELEAELEELE 162
|
170
....*....|.
gi 1907165175 564 KENESLRSKLD 574
Cdd:COG1579 163 AEREELAAKIP 173
|
|
| Filament |
pfam00038 |
Intermediate filament protein; |
511-849 |
3.33e-03 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 41.06 E-value: 3.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 511 SLLQEISALQEKLEAIHTDHQGEMTSLKEHFgareeafQKEIKALHTATEKLSKENESLRSKLDHANKENSDVialwKSK 590
Cdd:pfam00038 22 FLEQQNKLLETKISELRQKKGAEPSRLYSLY-------EKEIEDLRRQLDTLTVERARLQLELDNLRLAAEDF----RQK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 591 LETAIAsHQQAMEelkvsfskgigtdsAEFAELKTQIERL---RLDYQHEIESLQSKQDSERSAHAKEMETMQAKLmkii 667
Cdd:pfam00038 91 YEDELN-LRTSAE--------------NDLVGLRKDLDEAtlaRVDLEAKIESLKEELAFLKKNHEEEVRELQAQV---- 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 668 kekedsleavkarldsAEDQHLVEMEDTLNklqeaeIKANSITKELQekelvltglQDSLNQVNQVKETLEKELQTlkeK 747
Cdd:pfam00038 152 ----------------SDTQVNVEMDAARK------LDLTSALAEIR---------AQYEEIAAKNREEAEEWYQS---K 197
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 748 FASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRenltdmeakfKEKDDREDQLVKAKEKLENDIAEIMKMSGD 827
Cdd:pfam00038 198 LEELQQAAARNGDALRSAKEEITELRRTIQSLEIELQSLK----------KQKASLERQLAETEERYELQLADYQELISE 267
|
330 340
....*....|....*....|..
gi 1907165175 828 NSSQLTKMNDELRLKERSVEEL 849
Cdd:pfam00038 268 LEAELQETRQEMARQLREYQEL 289
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
723-1079 |
3.90e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 41.42 E-value: 3.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 723 LQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLhqkEEQFNVLSSELEKLRENLTDMEAKFKEKDD 802
Cdd:pfam07888 32 LQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRREL---ESRVAELKEELRQSREKHEELEEKYKELSA 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 803 REDQLVKAKEKLendiaeiMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQqqaa 882
Cdd:pfam07888 109 SSEELSEEKDAL-------LAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQ---- 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 883 rkheeekkeleeklleleKKMETSYNQCQDLKAKYEKASSETKTKHEEILQnLQKMLADTEDKLKAAQEANRDLMQDMEE 962
Cdd:pfam07888 178 ------------------AKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQ-LQDTITTLTQKLTTAHRKEAENEALLEE 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 963 LKTQADKAKAAQTAEDAMqimeqmtKEKTETLASLEDTKQTN---ARLQNELDTLK--ENNLKTVEELNKSKELLSVENQ 1037
Cdd:pfam07888 239 LRSLQERLNASERKVEGL-------GEELSSMAAQRDRTQAElhqARLQAAQLTLQlaDASLALREGRARWAQERETLQQ 311
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 1907165175 1038 KMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRD 1079
Cdd:pfam07888 312 SAEADKDRIEKLSAELQRLEERLQEERMEREKLEVELGREKD 353
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
350-840 |
4.00e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.49 E-value: 4.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 350 TALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGHDQHV-LELEAKMDQLRTMVEAADREKVelLN 428
Cdd:TIGR00618 375 HTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAhAKKQQELQQRYAELCAAAITCT--AQ 452
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 429 QLEEEKRKVEDLQFRVEEESITKGDLEQkspISEDPENVATVSEKSRIMELEKDLALRAQEVAELRRRLESSKPPGDVDM 508
Cdd:TIGR00618 453 CEKLEKIHLQESAQSLKEREQQLQTKEQ---IHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRR 529
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 509 SLSLLQEISALQEKLEaiHTDHQGemTSLKEHFGAREEAFQKEIKALHTATEK---LSKENESLRSKLDHANKENSDVIA 585
Cdd:TIGR00618 530 MQRGEQTYAQLETSEE--DVYHQL--TSERKQRASLKEQMQEIQQSFSILTQCdnrSKEDIPNLQNITVRLQDLTEKLSE 605
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 586 LWKSKLETAIASHQQAMEEL-KVSFSKGIGTDSAEFAELKTQIERLRLDYQHE---IESLQSKQDSERS-----AHAKEM 656
Cdd:TIGR00618 606 AEDMLACEQHALLRKLQPEQdLQDVRLHLQQCSQELALKLTALHALQLTLTQErvrEHALSIRVLPKELlasrqLALQKM 685
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 657 ETMQAKLMKIIKEKEDSLEAVKARLDSAE--DQHLVEMEDTLN----KLQEAEIKANSITKELQEK-------------- 716
Cdd:TIGR00618 686 QSEKEQLTYWKEMLAQCQTLLRELETHIEeyDREFNEIENASSslgsDLAAREDALNQSLKELMHQartvlkarteahfn 765
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 717 --------ELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRE 788
Cdd:TIGR00618 766 nneevtaaLQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLG 845
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|..
gi 1907165175 789 NLTDMEAKFKEKDDREDQLVKAKEKLendIAEIMKMSGDNSSQLTKMNDELR 840
Cdd:TIGR00618 846 EITHQLLKYEECSKQLAQLTQEQAKI---IQLSDKLNGINQIKIQFDGDALI 894
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
989-1211 |
4.13e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.97 E-value: 4.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 989 EKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQK----SQQLSALQ 1064
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERreelGERARALY 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1065 E--------ENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAE 1136
Cdd:COG3883 97 RsggsvsylDVLLGSESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQ 176
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907165175 1137 LEKLRNEVTVLRGENATAKSLhsvVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERAQESQQ 1211
Cdd:COG3883 177 QAEQEALLAQLSAEEAAAEAQ---LAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAG 248
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
351-772 |
4.34e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.29 E-value: 4.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 351 ALQEALKEKQQHIEQLLAE-RDLERAEVAKAtshvgEIEQELALARDghdqhvlELEAKMDQLRTMVEAADREKVELLNQ 429
Cdd:COG4717 136 ALEAELAELPERLEELEERlEELRELEEELE-----ELEAELAELQE-------ELEELLEQLSLATEEELQDLAEELEE 203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 430 LEEEKRKVEDLQFRVEEE-SITKGDLEQKSPISEDPENVATVSEKSRIMELEKDLALRAQEVAELRRRLESSkpPGDVDM 508
Cdd:COG4717 204 LQQRLAELEEELEEAQEElEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTI--AGVLFL 281
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 509 SLSLLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIALWK 588
Cdd:COG4717 282 VLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEE 361
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 589 SkletaiASHQQAMEELKVSFSKGIGTDSAEFAELKTQIERLRlDYQHEIESLQskqdSERSAHAKEMETMQAKLmkiik 668
Cdd:COG4717 362 E------LQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQ-ELKEELEELE----EQLEELLGELEELLEAL----- 425
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 669 ekedSLEAVKARLDSAEdQHLVEMEDTLNKLQEAEIKANSITKELQEkelvltglQDSLNQVNQVKETLEKELQTLKEKF 748
Cdd:COG4717 426 ----DEEELEEELEELE-EELEELEEELEELREELAELEAELEQLEE--------DGELAELLQELEELKAELRELAEEW 492
|
410 420
....*....|....*....|....
gi 1907165175 749 AStseeAVSAQTRMQDTVNKLHQK 772
Cdd:COG4717 493 AA----LKLALELLEEAREEYREE 512
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
660-1174 |
4.47e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 41.26 E-value: 4.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 660 QAKLMKIIKEKEDSLEAVKARLDSAED-----QHLVEMEDTLNKLQEAEIKANSITKELQEKELVLTGLQDSLNQVNQVK 734
Cdd:pfam05557 16 NEKKQMELEHKRARIELEKKASALKRQldresDRNQELQKRIRLLEKREAEAEEALREQAELNRLKKKYLEALNKKLNEK 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 735 ETLEKELQTLKekfASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKL 814
Cdd:pfam05557 96 ESQLADAREVI---SCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRQNLEKQQSSLAEAEQRI 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 815 ENDIAEIMKMSgDNSSQLTKMNDELRlkerSVEELQLKLTKANENASFLQKSIGEVTL-------------KAEQSQQQA 881
Cdd:pfam05557 173 KELEFEIQSQE-QDSEIVKNSKSELA----RIPELEKELERLREHNKHLNENIENKLLlkeevedlkrkleREEKYREEA 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 882 ARKHEEEKKELEEKLLELEKKMETSYN--------------QCQDLKAKYEKASSETKTKHEEILQ--------NLQKML 939
Cdd:pfam05557 248 ATLELEKEKLEQELQSWVKLAQDTGLNlrspedlsrrieqlQQREIVLKEENSSLTSSARQLEKARreleqelaQYLKKI 327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 940 ADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTkqtnarlqneLDTLKENNL 1019
Cdd:pfam05557 328 EDLNKKLKRHKALVRRLQRRVLLLTKERDGYRAILESYDKELTMSNYSPQLLERIEEAEDM----------TQKMQAHNE 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1020 KTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEElgrtrdevtsHQKLEEERSVLNNQLL 1099
Cdd:pfam05557 398 EMEAQLSVAEEELGGYKQQAQTLERELQALRQQESLADPSYSKEEVDSLRRKLE----------TLELERQRLREQKNEL 467
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907165175 1100 EMKKRESEFRKDADEEKAS-LQKSISLTSALLTEKDAELEKLRNEVTVLRGENATAKSLHSVVQTLESDKVKLELK 1174
Cdd:pfam05557 468 EMELERRCLQGDYDPKKTKvLHLSMNPAAEAYQQRKNQLEKLQAEIERLKRLLKKLEDDLEQVLRLPETTSTMNFK 543
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
932-1094 |
4.75e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.29 E-value: 4.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 932 LQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQT-AEDAMQIMEQMTKEKTETLASLEDTKQTNArLQNE 1010
Cdd:COG1579 19 LDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKrLELEIEEVEARIKKYEEQLGNVRNNKEYEA-LQKE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1011 LDTLKennlKTVEELNksKELLSVENQKmEEFKKEIETLKQAAAQKSQQLSALQEEnvkLAEELGRTRDEVtshQKLEEE 1090
Cdd:COG1579 98 IESLK----RRISDLE--DEILELMERI-EELEEELAELEAELAELEAELEEKKAE---LDEELAELEAEL---EELEAE 164
|
....
gi 1907165175 1091 RSVL 1094
Cdd:COG1579 165 REEL 168
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
562-785 |
5.15e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.15 E-value: 5.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 562 LSKENESLRSKLDHANkENSDVIALWKSKLETAIASHQQAMEELKVSfskgigtDSAEFAELKTQIERLR---LDYQHEI 638
Cdd:PHA02562 165 LSEMDKLNKDKIRELN-QQIQTLDMKIDHIQQQIKTYNKNIEEQRKK-------NGENIARKQNKYDELVeeaKTIKAEI 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 639 ESLQ------SKQDSERSAHAKEMETMQAKL-------MKIIKEKED---------SLEAVKARLDSAEDQhLVEMEDTL 696
Cdd:PHA02562 237 EELTdellnlVMDIEDPSAALNKLNTAAAKIkskieqfQKVIKMYEKggvcptctqQISEGPDRITKIKDK-LKELQHSL 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 697 NKLQEAEIKANSITKELQEKELVLTGLQDSLNQ--------VNQVKEtLEKELQTLKEKFASTSEEAVSAQTRMQDTVNK 768
Cdd:PHA02562 316 EKLDTAIDELEEIMDEFNEQSKKLLELKNKISTnkqslitlVDKAKK-VKAAIEELQAEFVDNAEELAKLQDELDKIVKT 394
|
250
....*....|....*....
gi 1907165175 769 L--HQKEEQFNVLSSELEK 785
Cdd:PHA02562 395 KseLVKEKYHRGIVTDLLK 413
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
954-1131 |
5.18e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 40.85 E-value: 5.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 954 RDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLS 1033
Cdd:PRK12705 29 QRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLENQLE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1034 VENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKlAEELGRTRDEvtshqkLEEERSVLNNQLLEMKKRESEfRKDAD 1113
Cdd:PRK12705 109 EREKALSARELELEELEKQLDNELYRVAGLTPEQAR-KLLLKLLDAE------LEEEKAQRVKKIEEEADLEAE-RKAQN 180
|
170
....*....|....*...
gi 1907165175 1114 EEKASLQKSISLTSALLT 1131
Cdd:PRK12705 181 ILAQAMQRIASETASDLS 198
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1025-1230 |
5.86e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.16 E-value: 5.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1025 LNKSKELLSVENQKMEEF-KKEIETLKQAAAQKSQQLSALQEEN--VKLAEELGRTRDEVTShqkLEEERSVLNNQLLEM 1101
Cdd:COG3206 162 LEQNLELRREEARKALEFlEEQLPELRKELEEAEAALEEFRQKNglVDLSEEAKLLLQQLSE---LESQLAEARAELAEA 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1102 KKRESEFRKDADEEKASLqkSISLTSALLTEKDAELEKLRNEVTVLRgenATAKSLHSvvqtlesdkvklelKVKNLELQ 1181
Cdd:COG3206 239 EARLAALRAQLGSGPDAL--PELLQSPVIQQLRAQLAELEAELAELS---ARYTPNHP--------------DVIALRAQ 299
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1907165175 1182 LKENKRQLSSSSGNTDAQAEEDERAQESQqmIDFLNSVIVDLQRKNQDL 1230
Cdd:COG3206 300 IAALRAQLQQEAQRILASLEAELEALQAR--EASLQAQLAQLEARLAEL 346
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
988-1144 |
5.95e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.91 E-value: 5.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 988 KEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKeietlKQAAAQKSQQLSALQEEN 1067
Cdd:COG1579 24 HRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEE-----QLGNVRNNKEYEALQKEI 98
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907165175 1068 VKLAEELGRTRDEVtshQKLEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEV 1144
Cdd:COG1579 99 ESLKRRISDLEDEI---LELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKI 172
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
922-1061 |
7.04e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 40.33 E-value: 7.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 922 SETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELK-----TQADKAKAAQTAEDAMQIMEQMTKEKTETLAS 996
Cdd:PRK09039 45 SREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRaslsaAEAERSRLQALLAELAGAGAAAEGRAGELAQE 124
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907165175 997 LEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQ----AAAQKSQQLS 1061
Cdd:PRK09039 125 LDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRrlnvALAQRVQELN 193
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
348-747 |
7.21e-03 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 40.51 E-value: 7.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 348 GTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEI----EQELALARDGHDQHVLELEAKMDQLRTMVEA-ADRE 422
Cdd:pfam09731 43 GEEVVLYALGEDPPLAPKPKTFRPLQPSVVSAVTGESKEPkeekKQVKIPRQSGVSSEVAEEEKEATKDAAEAKAqLPKS 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 423 KVELLNQLEEEKRKVEDLQFRVEEESITKGDLE--------QKSPISEDPENVATVSEKSRIMELEKDLALRAQEVAELR 494
Cdd:pfam09731 123 EQEKEKALEEVLKEAISKAESATAVAKEAKDDAiqavkahtDSLKEASDTAEISREKATDSALQKAEALAEKLKEVINLA 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 495 RRLESSKPPGDVDMSL----SLLQEISALQEKLEAiHTDHQGEMTSLKEHFGAREEAFQKEIKALHTATEKLSKENESLR 570
Cdd:pfam09731 203 KQSEEEAAPPLLDAAPetppKLPEHLDNVEEKVEK-AQSLAKLVDQYKELVASERIVFQQELVSIFPDIIPVLKEDNLLS 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 571 SKLDHAnkensdVIAlwksKLETAIASHQQAMEELKVsfskgigtdsAEFAELKTQIERLRLDYQHEIESLQSKQDSERS 650
Cdd:pfam09731 282 NDDLNS------LIA----HAHREIDQLSKKLAELKK----------REEKHIERALEKQKEELDKLAEELSARLEEVRA 341
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 651 AHAKEMETMQAKLMKIIKEK-EDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAEIKANSITKELQEKELVLTGLQDSLNQ 729
Cdd:pfam09731 342 ADEAQLRLEFEREREEIRESyEEKLRTELERQAEAHEEHLKDVLVEQEIELQREFLQDIKEKVEEERAGRLLKLNELLAN 421
|
410
....*....|....*...
gi 1907165175 730 VNQVKETLEKELQTLKEK 747
Cdd:pfam09731 422 LKGLEKATSSHSEVEDEN 439
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
349-800 |
7.48e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 40.86 E-value: 7.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 349 TTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVgeieQELALARDGHDQHVLELEAKMDQLRTMVEaadrEKVELLN 428
Cdd:pfam05483 358 TCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSEL----EEMTKFKNNKEVELEELKKILAEDEKLLD----EKKQFEK 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 429 QLEEEKRKVEDLQFRVEEESITKGDLEQKSPISEDPENVATVSEKSRIMELEKDLALRAQEVAELRRRLESSKppgdvdm 508
Cdd:pfam05483 430 IAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENK------- 502
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 509 slSLLQEISALQEKLEaihtDHQGEMTSLKEhfgaREEAFQKEIKALHTATEKLSKENESLRSKLDHANKEnsdvialWK 588
Cdd:pfam05483 503 --ELTQEASDMTLELK----KHQEDIINCKK----QEERMLKQIENLEEKEMNLRDELESVREEFIQKGDE-------VK 565
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 589 SKLETAiASHQQAMEELKVSFSKGIGTDSAEFAELKTQIERlRLDYQHEIESLQSKQDSERSAHAKEMETMQAKLMKIik 668
Cdd:pfam05483 566 CKLDKS-EENARSIEYEVLKKEKQMKILENKCNNLKKQIEN-KNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKL-- 641
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 669 ekEDSLEAVKARLDSAEDQHLVEMEDT-------LNKLQEAEIKANSITKELQEKEL--------VLTGLQDSLNQVNQV 733
Cdd:pfam05483 642 --ELELASAKQKFEEIIDNYQKEIEDKkiseeklLEEVEKAKAIADEAVKLQKEIDKrcqhkiaeMVALMEKHKHQYDKI 719
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907165175 734 KETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEK 800
Cdd:pfam05483 720 IEERDSELGLYKNKEQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEEKEKLKMEAKENTAILKDK 786
|
|
| Borrelia_P83 |
pfam05262 |
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins. |
929-1093 |
7.76e-03 |
|
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins.
Pssm-ID: 114011 [Multi-domain] Cd Length: 489 Bit Score: 40.37 E-value: 7.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 929 EEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKA----KAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTN 1004
Cdd:pfam05262 188 EDNEKGVNFRRDMTDLKERESQEDAKRAQQLKEELDKKQIDAdkaqQKADFAQDNADKQRDEVRQKQQEAKNLPKPADTS 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1005 ARLQNEldTLKENNLKTVEELNK-----SKELLSVENQKMEEFKKEIETLKQAAAQKSQQlsaLQEENVKLAEELGRTRD 1079
Cdd:pfam05262 268 SPKEDK--QVAENQKREIEKAQIeikknDEEALKAKDHKAFDLKQESKASEKEAEDKELE---AQKKREPVAEDLQKTKP 342
|
170
....*....|....
gi 1907165175 1080 EVTSHQKLEEERSV 1093
Cdd:pfam05262 343 QVEAQPTSLNEDAI 356
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
945-1264 |
8.48e-03 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 40.61 E-value: 8.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 945 KLKAAQEANRDLMQDMEELKTQADKAKaaqtaEDAMQIMEQMTKEKTETLASLEDTKQTNA----RLQNELDTLKENNLK 1020
Cdd:PLN03229 423 KREAVKTPVRELEGEVEKLKEQILKAK-----ESSSKPSELALNEMIEKLKKEIDLEYTEAviamGLQERLENLREEFSK 497
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1021 TVEELNKSKELLSVENQK-MEEFKKEI------ETLKQA-----AAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLE 1088
Cdd:PLN03229 498 ANSQDQLMHPVLMEKIEKlKDEFNKRLsrapnyLSLKYKldmlnEFSRAKALSEKKSKAEKLKAEINKKFKEVMDRPEIK 577
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1089 EERSVLNNQLLEMK-KRESEFRKDADEEKASLQKSISLTSA-LLTEKDAELEKLRNEvTVLRGENATAKSLHSVVQTLES 1166
Cdd:PLN03229 578 EKMEALKAEVASSGaSSGDELDDDLKEKVEKMKKEIELELAgVLKSMGLEVIGVTKK-NKDTAEQTPPPNLQEKIESLNE 656
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 1167 D---KVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERAQES---QQMIDFLNSviVDLQRKNQDLKMKVEMMSEA 1240
Cdd:PLN03229 657 EinkKIERVIRSSDLKSKIELLKLEVAKASKTPDVTEKEKIEALEQqikQKIAEALNS--SELKEKFEELEAELAAARET 734
|
330 340
....*....|....*....|....
gi 1907165175 1241 ALNGNGEDLNSYDSDDQEKQSKKK 1264
Cdd:PLN03229 735 AAESNGSLKNDDDKEEDSKEDGSR 758
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
705-1063 |
8.65e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 40.27 E-value: 8.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 705 KANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELE 784
Cdd:COG4372 11 ARLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQ 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 785 KLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQ 864
Cdd:COG4372 91 AAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 865 KSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLADTED 944
Cdd:COG4372 171 QELQALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEE 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 945 KLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEE 1024
Cdd:COG4372 251 LLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLEL 330
|
330 340 350
....*....|....*....|....*....|....*....
gi 1907165175 1025 LNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSAL 1063
Cdd:COG4372 331 ALAILLAELADLLQLLLVGLLDNDVLELLSKGAEAGVAD 369
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
590-747 |
9.08e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.52 E-value: 9.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165175 590 KLETAIASHQQAMEELKvsfskgigtdsAEFAELKTQIERLRLDYQhEIESLQSKQDSERSAHAKEMETMQAKLMKIIKE 669
Cdd:COG1579 21 RLEHRLKELPAELAELE-----------DELAALEARLEAAKTELE-DLEKEIKRLELEIEEVEARIKKYEEQLGNVRNN 88
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907165175 670 KEdsLEAVKARLDSAEDQHLVEMEDTLNKLQEAEIKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEK 747
Cdd:COG1579 89 KE--YEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAE 164
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