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Conserved domains on  [gi|1907150606|ref|XP_036018997|]
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zinc finger protein 697 isoform X3 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Gag_p24 pfam00607
gag protein p24 N-terminal domain; p24 forms inner protein layer of the nucleocapsid. ELISA ...
 156-282 2.55e-33

gag protein p24 N-terminal domain; p24 forms inner protein layer of the nucleocapsid. ELISA tests for p24 is the most commonly used method to demonstrate virus replication both in vivo and in vitro.


:

Pssm-ID: 459864  Cd Length: 128  Bit Score: 122.00  E-value: 2.55e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907150606 156 VHTPVEYIQIKELAEAVCNYGVSANFTIAQVERLAN-HAMTPGDWQTVVKAAAPSmGMYLEWKALWQDSCQTQARANATm 234
Cdd:pfam00607   1 VWEPLDFKLLKELKKAVKQYGPNSPYTMQLLEALASsNALTPYDWRTLAKAVLSP-GQYLLWKAEWQELAQEQARRNQR- 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1907150606 235 EGDQRTWTFELLTGQGQHAA--NQTDYHWGVYAQISPAAVKAWKALSKKG 282
Cdd:pfam00607  79 AGPDRGITLDMLTGTGQYATpqAQAQLPPEVLEQIKALALRAWKKLPPPG 128
Gag_p24_C super family cl44748
Gag protein p24 C-terminal domain; p24 forms inner protein layer of the nucleocapsid. ELISA ...
 288-353 4.19e-16

Gag protein p24 C-terminal domain; p24 forms inner protein layer of the nucleocapsid. ELISA tests for p24 is the most commonly used method to demonstrate virus replication both in vivo and in vitro.


The actual alignment was detected with superfamily member pfam19317:

Pssm-ID: 466038  Cd Length: 74  Bit Score: 72.90  E-value: 4.19e-16
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907150606 288 LTKITQGAQESFSDFVARMTEAAGRIFGDPEAAMPLIEQLVYEQATQECRSAITPRKSKG-LQDWLK 353
Cdd:pfam19317   7 LADIRQGPKEPYQDFVARLYDALRKEMPDGKAKDVITKQLAYENANPECQDLLKPLGKTGtLSDMIR 73
zf-CCHC_5 super family cl20708
GAG-polyprotein viral zinc-finger;
408-439 4.86e-06

GAG-polyprotein viral zinc-finger;


The actual alignment was detected with superfamily member pfam14787:

Pssm-ID: 373297  Cd Length: 36  Bit Score: 43.31  E-value: 4.86e-06
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1907150606 408 PGLCTKCGKGYHWAKDCRSIRDIRGRLLQPTR 439
Cdd:pfam14787   2 PGLCPRCKKGKHWARDCHSKFDKNGNPLSPNE 33
AIR1 super family cl34894
Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational ...
 374-443 7.35e-06

Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion];


The actual alignment was detected with superfamily member COG5082:

Pssm-ID: 227414 [Multi-domain]  Cd Length: 190  Bit Score: 46.38  E-value: 7.35e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907150606 374 GRRRSDSTELKLCFNCSKPGHLKKDCraPIKRTAPGLCTKCGKGYHWAKDCRSI-RD--IRGRLLQPTRSYCP 443
Cdd:COG5082    88 GHRSNHCPKPKKCYNCGETGHLSRDC--NPSKDQQKSCFDCNSTRHSSEDCPSIwKHyvLNNGDGHPIKKFCY 158
 
Name Accession Description Interval E-value
Gag_p24 pfam00607
gag protein p24 N-terminal domain; p24 forms inner protein layer of the nucleocapsid. ELISA ...
 156-282 2.55e-33

gag protein p24 N-terminal domain; p24 forms inner protein layer of the nucleocapsid. ELISA tests for p24 is the most commonly used method to demonstrate virus replication both in vivo and in vitro.


Pssm-ID: 459864  Cd Length: 128  Bit Score: 122.00  E-value: 2.55e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907150606 156 VHTPVEYIQIKELAEAVCNYGVSANFTIAQVERLAN-HAMTPGDWQTVVKAAAPSmGMYLEWKALWQDSCQTQARANATm 234
Cdd:pfam00607   1 VWEPLDFKLLKELKKAVKQYGPNSPYTMQLLEALASsNALTPYDWRTLAKAVLSP-GQYLLWKAEWQELAQEQARRNQR- 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1907150606 235 EGDQRTWTFELLTGQGQHAA--NQTDYHWGVYAQISPAAVKAWKALSKKG 282
Cdd:pfam00607  79 AGPDRGITLDMLTGTGQYATpqAQAQLPPEVLEQIKALALRAWKKLPPPG 128
Gag_p24_C pfam19317
Gag protein p24 C-terminal domain; p24 forms inner protein layer of the nucleocapsid. ELISA ...
 288-353 4.19e-16

Gag protein p24 C-terminal domain; p24 forms inner protein layer of the nucleocapsid. ELISA tests for p24 is the most commonly used method to demonstrate virus replication both in vivo and in vitro.


Pssm-ID: 466038  Cd Length: 74  Bit Score: 72.90  E-value: 4.19e-16
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907150606 288 LTKITQGAQESFSDFVARMTEAAGRIFGDPEAAMPLIEQLVYEQATQECRSAITPRKSKG-LQDWLK 353
Cdd:pfam19317   7 LADIRQGPKEPYQDFVARLYDALRKEMPDGKAKDVITKQLAYENANPECQDLLKPLGKTGtLSDMIR 73
zf-CCHC_5 pfam14787
GAG-polyprotein viral zinc-finger;
408-439 4.86e-06

GAG-polyprotein viral zinc-finger;


Pssm-ID: 373297  Cd Length: 36  Bit Score: 43.31  E-value: 4.86e-06
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1907150606 408 PGLCTKCGKGYHWAKDCRSIRDIRGRLLQPTR 439
Cdd:pfam14787   2 PGLCPRCKKGKHWARDCHSKFDKNGNPLSPNE 33
AIR1 COG5082
Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational ...
 374-443 7.35e-06

Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion];


Pssm-ID: 227414 [Multi-domain]  Cd Length: 190  Bit Score: 46.38  E-value: 7.35e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907150606 374 GRRRSDSTELKLCFNCSKPGHLKKDCraPIKRTAPGLCTKCGKGYHWAKDCRSI-RD--IRGRLLQPTRSYCP 443
Cdd:COG5082    88 GHRSNHCPKPKKCYNCGETGHLSRDC--NPSKDQQKSCFDCNSTRHSSEDCPSIwKHyvLNNGDGHPIKKFCY 158
PTZ00368 PTZ00368
universal minicircle sequence binding protein (UMSBP); Provisional
 375-426 1.10e-05

universal minicircle sequence binding protein (UMSBP); Provisional


Pssm-ID: 173561 [Multi-domain]  Cd Length: 148  Bit Score: 45.18  E-value: 1.10e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1907150606 375 RRRSDSTELKLCFNCSKPGHLKKDCRAPIKRTAPG-LCTKCGKGYHWAKDCRS 426
Cdd:PTZ00368   95 NRAKGGAARRACYNCGGEGHISRDCPNAGKRPGGDkTCYNCGQTGHLSRDCPD 147
ZnF_C2HC smart00343
zinc finger;
411-426 8.76e-03

zinc finger;


Pssm-ID: 197667 [Multi-domain]  Cd Length: 17  Bit Score: 33.57  E-value: 8.76e-03
                           10
                   ....*....|....*.
gi 1907150606  411 CTKCGKGYHWAKDCRS 426
Cdd:smart00343   2 CYNCGKEGHIARDCPS 17
 
Name Accession Description Interval E-value
Gag_p24 pfam00607
gag protein p24 N-terminal domain; p24 forms inner protein layer of the nucleocapsid. ELISA ...
 156-282 2.55e-33

gag protein p24 N-terminal domain; p24 forms inner protein layer of the nucleocapsid. ELISA tests for p24 is the most commonly used method to demonstrate virus replication both in vivo and in vitro.


Pssm-ID: 459864  Cd Length: 128  Bit Score: 122.00  E-value: 2.55e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907150606 156 VHTPVEYIQIKELAEAVCNYGVSANFTIAQVERLAN-HAMTPGDWQTVVKAAAPSmGMYLEWKALWQDSCQTQARANATm 234
Cdd:pfam00607   1 VWEPLDFKLLKELKKAVKQYGPNSPYTMQLLEALASsNALTPYDWRTLAKAVLSP-GQYLLWKAEWQELAQEQARRNQR- 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1907150606 235 EGDQRTWTFELLTGQGQHAA--NQTDYHWGVYAQISPAAVKAWKALSKKG 282
Cdd:pfam00607  79 AGPDRGITLDMLTGTGQYATpqAQAQLPPEVLEQIKALALRAWKKLPPPG 128
Gag_p24_C pfam19317
Gag protein p24 C-terminal domain; p24 forms inner protein layer of the nucleocapsid. ELISA ...
 288-353 4.19e-16

Gag protein p24 C-terminal domain; p24 forms inner protein layer of the nucleocapsid. ELISA tests for p24 is the most commonly used method to demonstrate virus replication both in vivo and in vitro.


Pssm-ID: 466038  Cd Length: 74  Bit Score: 72.90  E-value: 4.19e-16
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907150606 288 LTKITQGAQESFSDFVARMTEAAGRIFGDPEAAMPLIEQLVYEQATQECRSAITPRKSKG-LQDWLK 353
Cdd:pfam19317   7 LADIRQGPKEPYQDFVARLYDALRKEMPDGKAKDVITKQLAYENANPECQDLLKPLGKTGtLSDMIR 73
zf-CCHC_5 pfam14787
GAG-polyprotein viral zinc-finger;
408-439 4.86e-06

GAG-polyprotein viral zinc-finger;


Pssm-ID: 373297  Cd Length: 36  Bit Score: 43.31  E-value: 4.86e-06
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1907150606 408 PGLCTKCGKGYHWAKDCRSIRDIRGRLLQPTR 439
Cdd:pfam14787   2 PGLCPRCKKGKHWARDCHSKFDKNGNPLSPNE 33
AIR1 COG5082
Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational ...
 374-443 7.35e-06

Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion];


Pssm-ID: 227414 [Multi-domain]  Cd Length: 190  Bit Score: 46.38  E-value: 7.35e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907150606 374 GRRRSDSTELKLCFNCSKPGHLKKDCraPIKRTAPGLCTKCGKGYHWAKDCRSI-RD--IRGRLLQPTRSYCP 443
Cdd:COG5082    88 GHRSNHCPKPKKCYNCGETGHLSRDC--NPSKDQQKSCFDCNSTRHSSEDCPSIwKHyvLNNGDGHPIKKFCY 158
PTZ00368 PTZ00368
universal minicircle sequence binding protein (UMSBP); Provisional
 375-426 1.10e-05

universal minicircle sequence binding protein (UMSBP); Provisional


Pssm-ID: 173561 [Multi-domain]  Cd Length: 148  Bit Score: 45.18  E-value: 1.10e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1907150606 375 RRRSDSTELKLCFNCSKPGHLKKDCRAPIKRTAPG-LCTKCGKGYHWAKDCRS 426
Cdd:PTZ00368   95 NRAKGGAARRACYNCGGEGHISRDCPNAGKRPGGDkTCYNCGQTGHLSRDCPD 147
PTZ00368 PTZ00368
universal minicircle sequence binding protein (UMSBP); Provisional
 386-429 2.52e-05

universal minicircle sequence binding protein (UMSBP); Provisional


Pssm-ID: 173561 [Multi-domain]  Cd Length: 148  Bit Score: 44.03  E-value: 2.52e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1907150606 386 CFNCSKPGHLKKDCRAPIKRTAPGLCTKCGKGYHWAKDCRSIRD 429
Cdd:PTZ00368   55 CYNCGKTGHLSRECPEAPPGSGPRSCYNCGQTGHISRECPNRAK 98
PTZ00368 PTZ00368
universal minicircle sequence binding protein (UMSBP); Provisional
 386-428 3.69e-05

universal minicircle sequence binding protein (UMSBP); Provisional


Pssm-ID: 173561 [Multi-domain]  Cd Length: 148  Bit Score: 43.64  E-value: 3.69e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1907150606 386 CFNCSKPGHLKKDCRAPIKRTAPGLCTKCGKGYHWAKDCRSIR 428
Cdd:PTZ00368   30 CYKCGEPGHLSRECPSAPGGRGERSCYNCGKTGHLSRECPEAP 72
PTZ00368 PTZ00368
universal minicircle sequence binding protein (UMSBP); Provisional
 381-424 3.31e-04

universal minicircle sequence binding protein (UMSBP); Provisional


Pssm-ID: 173561 [Multi-domain]  Cd Length: 148  Bit Score: 40.95  E-value: 3.31e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1907150606 381 TELKLCFNCSKPGHLKKDCRAPIK-RTAPGLCTKCGKGYHWAKDC 424
Cdd:PTZ00368   75 SGPRSCYNCGQTGHISRECPNRAKgGAARRACYNCGGEGHISRDC 119
AIR1 COG5082
Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational ...
 376-429 5.14e-04

Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion];


Pssm-ID: 227414 [Multi-domain]  Cd Length: 190  Bit Score: 40.99  E-value: 5.14e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907150606 376 RRSDSTELKLCFNCSKPGHLKKDCRAPIKR------------TAPGLCTKCGKGYHWAKDCRSIRD 429
Cdd:COG5082    53 VSAIREENPVCFNCGQNGHLRRDCPHSICYncswdghrsnhcPKPKKCYNCGETGHLSRDCNPSKD 118
ZnF_C2HC smart00343
zinc finger;
411-426 8.76e-03

zinc finger;


Pssm-ID: 197667 [Multi-domain]  Cd Length: 17  Bit Score: 33.57  E-value: 8.76e-03
                           10
                   ....*....|....*.
gi 1907150606  411 CTKCGKGYHWAKDCRS 426
Cdd:smart00343   2 CYNCGKEGHIARDCPS 17
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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